RNA id: XM_007256069.3


Basic Information

Item Value
RNA id XM_007256069.3
length 3168
RNA type mRNA
GC content 0.48
exon number 18
gene id cog2
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8514358 ~ 8530448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGTGATGCTGGATGGAGCCCGGCGGGGGGCGCTGGAGGGATCTCTCCGCTTCAGCTCCACACTGACTGCTGCTCGTGCCATGTTTGCGGAAGTGTCTGTATGGAGCTGAAGAACATTAGACAGTGTAGTTTAGTGAATAATGGACTTTAATGCCGCAGAGTTTCAGCAATAAACAGCCggacagcagcactgctgtgctcaGACTCACTAATGATGAACCTGCCGAAGGGACCAGACTCTCTGTGCTTTAATAAAGACGAGTTTATGAAGGATGACTTTGATGTGGACAGATTTGTGGCCGAGTGCAGGAAACATGTGCAGCTGGAGCAGATGCGGGAGGACCTGGAGCAGTATTACAGGCTCCTCAAAACTGCTATGGTTGAGCTCATCAACAAAGACTATGCAGATTTTGTCAACTTGTCCACTAATCTTgTTGGAATGGATAAAGCCCTCAACCAGCTTTCTGTTCCGCTGGGCCAACTACGTGAAGAAGTGCTGAGTCTCAGGTCAGCAGTTAATGAAGTAATCCAAGCCATAGATACACAGTTGTCCAAACAAGATGACATTCAAAAGAAAAAGATCAGTGTATTGAGACTCATACATGTCGTTCGGTCGGTGGAGAAGATTGAGAAAATCCTACACTCTCAAAACGCCAAAGACACAACATCTCTAGAATCTAGCAGTCCTTTACTAGCTGGTCAGATTCTCGAGCGGATTGCCACTGAGTTTAACCAGCTGCAGTTTCATGCGGTCCAGAGCAAAGGGATGCCACTGCTGGACAAAGTGCGACCGAGGATTGCTGGCATTACTGCTATGCTCCAGCAGTCTTTAGAGGGTCTACTAATCCAGGGTCTGCAGACATCCAACGTGGACATTGTGCGGCACTGCCTCCGCACATACGCTACCATCGACAAGACTAGAGACGCAGAGGCACTGGTGGGACAAGTCTTAGTTAAGCCTTACATGGATCAGgttATAACTGAGCAGTTTGTGAAGTCCAGCCCTAATGGTCTTCAGCTGATGTATGCAAAGCTGCTGGAATTTGTGCCTCATCATTGCCGACTGCTCCGAGAGGTCACAGGAGGGACTATTTCCAGTGACAAAGCTGACATCGTGCCAGGTTACGACTTCCTGGTTAACTCGGTCTGGCCTGAGATCATTAAAGGTGTTGAGGGGCGGATTCCCTTCCTTTTCAACCCTGGCAACCCTGATGCTTTTTATGAGAGATACTGCATTAGCATGGACTTTGTACGGAAGTTTGAAAGACAGTGTGGCTCTCAGGCTAGTGTGAAGAGGCtccgagcacacgcctcctacCAAAGCTTCCACAACAAATGGAACCTCCCTGTCTACTTTCAGCTACGGTATAAGGAGATTGCTGCATGTTTAGAAAACGCCATTACAGAAGGACTAGGAGCAGCTCCAGtgGGCAGCCGCTACCGTCTGCAGGTGACTGAGGTGTtatggagctgtgtgtgtaggtgttggGCGGAGCACATCTACCTGCCTCCGCTGGCTCATCGTTTCTGGAAGCTAACACTACAGCTTCTCTCCAGATATGCTGCGTTCCTCACTGAGGTTCTAACAAAAACGCCGCCTCCTGAATCTACCAAAGACCCAGTGAGGCCACTGCCAAGCTCCGCCTCCTCCACATCAAGCCGCACCTCTCAAGATGCAGACAGTGAGAGCGGAGGACCCACAGCTCTCTCCACCAAACAGCTGGTCTTCATCGCAGCTGATGTGGACCATTTACAGGAGCAGATTCCAGAAATCTCTGAGCTGATCCGAGAGAGACTTGAGGGAATAGGATTCAAAATCTTTGCTCTTGTTTCAGATGCCTTGGAAGACTCCAAATCTGCCTTGTCTGTATGCATCCCAACACTGAGCAACAGAATGACTCAGCATCTGACGGAGAGGAGTGTCCGCTTCCTGAAGAATGCTTCAGAAGTCCCGCGACTTTATCGAAGGACCAACAAGGAAGTGCCAACCAGAGCCTCGGCCTACATGGATAACGCTTTGCGGCCACTTCATCAGCTGGTCACTGACTCCACAGGTGTGGTGAAGGACTCCATCATCCAGCAGTGGCTACGTGTTACTCTTTCAGATTGCACCCACAGATACTTTGAGACCATATCTGATGTGCTGAGCTCCGTGAAAAAGATGGAGGAGAGTCTGAAGCGGTTGAAACAGGCGAGGAAAACCGCCACAACCAGCACAGCAGGAGCCAACACCGGCCCCTCTGATGACTCTAAGATCCGTCTGCAGCTGGCTCTGGATGTGGAGTATCTCGGAGAGCAGATTCAGAAGATGGGTCTTCAGCCAAGTGACATCCCCATGTTCTCCTCTCTGCTGGACTTGGTGCAAGAAGCAAGGGATCTGGCCACAGCAGAGCAAGCCGGTTCCTAGGAGTCACCTTCCGGGTTTCCTCATCCCACATGGACTCAGCAGACACATGCTCTAAGCAGTGAAGGGAGTAAAGGAAAAGGGCTGCCCTTATAGTTCTTATGTTGCAATTCTCAGAACCCTGGTGGTCTAATTACAGTTATTAGGCTGAATCACGGCTGATCTGGGATTCCCAGCTGTAACCTTTTCCCGTGCAGTGAAGAAGCACACAACAAGAATGTGTCTACACACTCAGATCTTATTTATTCTGCAATCAGATCAGATAATatgtaacaaaaatgtttaatatcagaATTAACACAGTGAGATTATATATATCATGTAAATGTTAATTCTTAACATGTTAGGATTCGAGAAGTGAGTGGGGTTTGTATGCTGTGTGTCATGTGTCACGGTTCATGTTGTTATGACCTGTCATGCACTCTTGCATTAAGCCATGAAATTAGTATGATGACTAATGACTCTGAAAACtggtcttatttaaaaaaaaaaaaaaaaaaaatcgctatTTCATGACCTAAGCTGACCTCAGCTTCTCTATCAGAATGAATCCATAAAACACCTCCGCCACAGTGCCTCCTCTGAGGCCTGCCAGGCAACATGAAGCCCAGAGCCCTGTAGAGCCTCGCGGGATTATATTGGCATTTTAAACACCATGGGAACATGGCCGTTATACTTTACATGTTGTTTTACTGGACAAGAATGGGACGTCTGTAACTTTTAACCATAGatttgacaataaaaaaaaggtttgggaTAATA

Function

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20289 COG2; conserved oligomeric Golgi complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291597 lncRNA upstream 58195 8454744 ~ 8456163 (+) True G214853
XR_002651894.1 lncRNA upstream 269343 8237642 ~ 8245015 (+) True LOC111195960
TU291388 lncRNA upstream 429081 8079490 ~ 8085277 (+) False G214704
TU291387 lncRNA upstream 437006 8074834 ~ 8077352 (+) True G214704
XR_002651892.1 lncRNA upstream 585193 7927113 ~ 7929165 (+) True LOC111195956
TU291618 lncRNA downstream 85645 8616093 ~ 8622470 (+) True G214868
TU291619 lncRNA downstream 85645 8616093 ~ 8658455 (+) False G214868
TU291626 lncRNA downstream 167480 8697928 ~ 8699697 (+) True G214875
TU291633 lncRNA downstream 188375 8718823 ~ 8722998 (+) True G214881
TU291713 lncRNA downstream 308106 8838554 ~ 8841483 (+) False G214942
XM_022684543.1 mRNA upstream 60540 8306242 ~ 8453818 (+) True galnt2
XM_022684544.1 mRNA upstream 60540 8306246 ~ 8453818 (+) False galnt2
XM_007256067.3 mRNA upstream 247745 8254584 ~ 8266613 (+) False LOC103036505
XM_015607563.2 mRNA upstream 254718 8254584 ~ 8259640 (+) True LOC103036505
XM_022684682.1 mRNA upstream 261787 8245563 ~ 8252571 (+) True LOC107197794
XM_007256071.3 mRNA downstream 10517 8540965 ~ 8649769 (+) False phactr2
XM_007256075.3 mRNA downstream 10517 8540965 ~ 8649769 (+) False phactr2
XM_007256074.3 mRNA downstream 33150 8563598 ~ 8649769 (+) False phactr2
XM_007256073.3 mRNA downstream 43970 8574418 ~ 8649769 (+) True phactr2
XM_007256072.3 mRNA downstream 51380 8581828 ~ 8649769 (+) False phactr2
TU291488 other upstream 403033 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 637240 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 701326 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 2032729 6481558 ~ 6481629 (+) True trnam-cau_43
TU290727 other upstream 2105290 6399076 ~ 6409068 (+) True LOC111196031
TU291737 other downstream 427851 8958299 ~ 8961770 (+) False LOC103041196
TU292392 other downstream 2045047 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 2416631 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 2596718 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 2598922 11129370 ~ 11175348 (+) False cpeb3

Expression Profile