RNA id: XM_007256101.3


Basic Information

Item Value
RNA id XM_007256101.3
length 2441
RNA type mRNA
GC content 0.42
exon number 9
gene id vps26a
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9469084 ~ 9480545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGTTCGCGGAtctgtggggaaagagcgctgctgctgctgctgctgcgggtcCTGGTGTGGAGCTGCTGTTGGGACTGACCGACTTAAAGCGGAAAAGCTGCTGAAATGAGTTTCCTTGGCGGTTTGTTTGGGCCTATCTGTGAGATTGATGTCATACTAAATGATGCTGAGAGTAGAAAGACAGCAGAGCTGAAAACAGAAGATGGAAAAGTGGAAAAACATTACTTATTTTATGATGGAGAGTCTGTGTCAGGAAAGGTTAATCTGAATGTGAAACAGACCAGCAAGCGGCTTGAACATCAGGGAATTCGAATAGAGTTTGTTGGACAGATCGAACTCTTCAGTGATAAAAGCAACACACATGAATTTGTAAACCTTGTAAAGGAGCTTGCTCTTCCTGGAGAGTTGACCCAGAATCGCAGCTATGACTTTGAATTCATGCAAGTGGAGAAGCCATACGAGTCCTATGTTGGAGCTAATGTGCGACTGAGGTATTTCCTCAAAGTAACAATAGTGCGAAGGCTGTCTGATTTGGTAAAAGAGTACGACATCATTGTCCATCAGCTCGCTACCTACCCTGATGTCAACAATTCCATCAAAATGGAGGTGGGCATTGAAGACTGCCTACATATAGAGTTTGAGTACAACAAGTCCAAATACCACCTAAAAGATGTAATTGTTGGTAAAATCTACTTTCTGCTGGTTCGAATCAAAATTCAACACATGGAGCTTCAGCTGATCAAGAAAGAAATGACAGGAATTGGGCCAAGTACAACTACGGAGACCGAAACCGTCGCCAAATATGAGATTATGGATGGAGCGCCAGTGAAGGGTGAGTCCATTCCCATACGCCTGTTCCTCGCTGGCTATGACCTCACAGCTACAATGAGAGATGTAAACAAGAAGTTCTCAGTGAGGTACTTTCTAAATCTGGTCCTGGTAGATGAAGAGGATAGGAGGTACTTCAAACAGCAGGAGATTGTTTTGTGGCGAAAAGCCCCAGAGAAAATGCGAAAACGCAATTTCCACCAGCGCTACGAGTCGCCAGAGCCACGGCCGAGCCTCTCCGCCGAGCAGCCAGAAATGTGAGGAGGGAGGGGTCCAGGAACAGCCAGCCAGGGACACATTTCTTCAGTAGCCAATTGCAGGAGAGGAGAGCAACTCCCACCAAACATTCACACCACCACTCGTCACAGCTTGCGGTGATGAGCTGTGTCCTTCGCCTGCCTTCGCTGTGTCCACTCCGCCGTCCACAGCAAGCAATTCGTTAGCATACAAGGACTTCTTCCACACTATAGAAAGCACTGGAACTGAAGCTACTATCTTATTCTTATAGTACAGTTTGGGGCTTGCACCCTTCTATagatgaagatttttttgtttgtttttccctttttttaaagcacttgCTAGTTATCCTGAAGCTCCAGATAAATAAGAGGCAGCCAGGAATCTAAAAGATACACTTCACTTCAGAGAGCGTTCTAGTGCATGCTGGTTGGTTGGATTGAATCTGGTTACAAACAGCTATGTAGGCTATCGGGACTCAAAGGTCAAGAAATGCAATGTGTTCCGTGTGTATCCGGGCCAGAGTGCCATACTGTTTTTGCAATCGCTTTTAAGATGTAAAAGATTTCTATTTAACTTATTTAGTGTCAAATCTTTAGGTCTTTCTTGCGGATTTCTCCTCATTGTAAGTACATTTTGGACaaacagattatatatataaatatattatcaaGATATTCAATGTTTTGCATGAGGCTTTGGATTTGAAACTTtacaaaattacctaaaaattatgttttacaaTGGTTACATGTGAGCGACTTACAGCCCGTGGGTTTAGCTGATAATGGAGTAGCTCACgtcaatattcttatttttgttcTCTTAACGTGTTGAGATTTCTCTCAACCTTGCTGCAGAGCTAAATGTAGGCTGCACTGCTTTCACTTTTAGAGTAGTAAcattcttcttctgtttctgaaaACCATATGCAGGCATTTCCTCTCCTTGTTTAAGTGTTCAAGTGCCCATATGGTTCTGATTAAATTATGCCAAGTTATATCCCATGCATGACAGCCTGGTTAATGGTTTTGGTACACAGAACAGCGTTCCTTTCCATTTTCATGTTGCTGATGTGCATAAAGTTCTCTACAGGATGGTGAGAATCTACATTCCTTTGGATGTTGAATTACCAGCATACAGGCCATTATGGTTATGATATGAACGACGCTAATCTTTTTAAACTCTACGACACTACTACAGGTGAGGCTGTTCTCCAGCCTTAAGTGCTGTCACTGTAATGCATTGGGAATATTTGCTACATGGATGTGCAGCCATGTAAAGttatttgtggaaaaaaatgtacatatccagCCTCAACCTGTTATCTGTTAATCtgtcaaataaaaatgcaagtTTATACTGGTAAA

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0030904 retromer complex cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291947 lncRNA upstream 685 9466620 ~ 9468399 (+) True G215094
TU291871 lncRNA upstream 158911 9288076 ~ 9310173 (+) True G215039
TU291829 lncRNA upstream 399217 9068995 ~ 9069867 (+) True G215011
TU291799 lncRNA upstream 482969 8981914 ~ 8986115 (+) True G214990
TU291955 lncRNA downstream 770 9481315 ~ 9481538 (+) True G215102
TU291957 lncRNA downstream 1127 9481672 ~ 9482581 (+) True G215103
TU292091 lncRNA downstream 214372 9694917 ~ 9695273 (+) True G215197
TU292094 lncRNA downstream 279743 9760288 ~ 9762248 (+) True G215199
TU292118 lncRNA downstream 306607 9787152 ~ 9788616 (+) True G215215
XM_007256100.3 mRNA upstream 2978 9461330 ~ 9466106 (+) True srgn
XM_007256099.3 mRNA upstream 28170 9432604 ~ 9440914 (+) True kif1bp
XM_007256092.2 mRNA upstream 175442 9263639 ~ 9293642 (+) True LOC103044072
XM_022684425.1 mRNA upstream 438486 8958309 ~ 9030598 (+) True LOC103041196
XM_007256087.3 mRNA upstream 528539 8920468 ~ 8940545 (+) True LOC103042822
XM_007256102.3 mRNA downstream 3053 9483598 ~ 9494529 (+) True supv3l1
XM_007256103.3 mRNA downstream 16289 9496834 ~ 9515939 (+) True LOC103047009
XM_007240834.3 mRNA downstream 44274 9524819 ~ 9542971 (+) True hk1
XM_007240835.3 mRNA downstream 85403 9565948 ~ 9614642 (+) True tspan15
XM_022684567.1 mRNA downstream 151846 9632391 ~ 9653852 (+) True cfap43
TU291737 other upstream 507314 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 1357759 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 1591966 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 1656052 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 2987455 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 1094950 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 1466534 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 1646621 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 1648825 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2724956 12205501 ~ 12206164 (+) True G215834

Expression Profile