RNA id: XM_007260210.3


Basic Information

Item Value
RNA id XM_007260210.3
length 1047
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103043683
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42215743 ~ 42222054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGTCGCAATCAGGTCAACAAAGCACACTCTGTGCAGGACTTTGTTTTTTCACGCAACACACATCGAGTCAACAGAGCTCCATATAGAGTGGAAAACTGAAGAACGCTACAGTACCACAACTATCATGGACTCTACAGCACAGGGGCATTTGAAATGGCTTTGTTTGATGCtagTGCTCGTCTCAGGTGGCGCTCTGGCTCAGACCAGTTCACCCAGCTGCCCTGCCTGGTCTTTCGAGCATTTCTCCAAAATGCTAAAGGCCTCAGAGGAATGCCTGCAGTCACCCGAGGCTCagtggacagacagacaaactgCAGCTTTACTCGACAGCCTGCGCAGACTGACTGAGATTTTAGAGAAACGTCAAAAAGCagTGTGTAAAGACACCATGCCTGGGGACTGCCCTTTCCCAGTGGTCCACAGTAAAGGAGGACTGGCCTGTGTGGCTATAGAAGAGAAGATTTACTGCAAGCCAATGTGCAACGAGGGTCAGGACTTCTCCTTTCTGAGGAGATCGAGGGTGTATGAGGAGTGCAGCGCTGCTACTAACAGCAAATGGACAACACAGTATGTGGGCGGGAACAAGCTGGCTGTGTGTAACAAATCCAACCTCCAGATATCAGGAGCTGCTTCAGCCTATTTCCCTAAAGACCAGGACTGCCTGAAGACCAAGAGTGACCCAGCACTGGAGGAGTCAGTCATTCAGAGCTTTATAGCAGAGCTGAGAAATAACTCCATCACAGGCAATATCACACATAGCTGTCTCCTCTGTGGATGAAATAAGCACTGCTAGAACAGGGCTGGATTACCTGTACTAGAATATATTTCAAATTGTTGTTGATGAATGAATCTGAATTATTGAGTTTTTAACAGTGTGACATTAATAAAGGCGGGGTGattttaattcagtatgaatTAGCAGAGTTCATAGTTTTCAGACTGACAGTGATACTGTAGTGTCAATgatttaaatccagtatgaatctactgTTTATGCAGATTTTAACAGTCTGACTTTAATAAAGGtagagtgattttaatccag

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302762 lncRNA upstream 38456 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 166581 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 229919 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 700470 41506061 ~ 41515273 (+) True G223092
TU302714 lncRNA upstream 772686 41441520 ~ 41443057 (+) True G223090
TU302792 lncRNA downstream 120787 42342841 ~ 42371581 (+) False gfra1
TU302842 lncRNA downstream 230795 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 267529 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 310056 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 407923 42629977 ~ 42630263 (+) True G223207
XM_022685159.1 mRNA upstream 921493 41287961 ~ 41294250 (+) True LOC103042542
XM_007260206.3 mRNA upstream 921493 41287963 ~ 41294250 (+) False LOC103042542
XM_007260212.3 mRNA upstream 936665 41276985 ~ 41279078 (+) True LOC103044280
XM_022684817.1 mRNA upstream 1016918 41195985 ~ 41198825 (+) True LOC111195996
XM_022684797.1 mRNA upstream 1022534 41184961 ~ 41193209 (+) True LOC103046574
XM_022685162.1 mRNA downstream 21757 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA downstream 21757 42243811 ~ 42371477 (+) False gfra1
XM_007238585.3 mRNA downstream 489406 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 552191 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 686451 42908505 ~ 42935835 (+) True rab11fip2
XR_002651928.1 other upstream 1024864 41189350 ~ 41190879 (+) False LOC103046574
TU302648 other upstream 1142427 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other upstream 1142427 41065669 ~ 41073316 (+) False LOC103045954
TU302651 other upstream 1142427 41065669 ~ 41073316 (+) False LOC103045954
LOC103047655 other upstream 1863278 40349881 ~ 40352465 (+) False LOC103047655
trnag-gcc_7 other downstream 187967 42410021 ~ 42410091 (+) True trnag-gcc_7
trnag-gcc_8 other downstream 188132 42410186 ~ 42410255 (+) True trnag-gcc_8
trnag-gcc_9 other downstream 188296 42410350 ~ 42410419 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 188460 42410514 ~ 42410584 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 188625 42410679 ~ 42410748 (+) True trnag-gcc_11

Expression Profile