RNA id: XM_015605419.2


Basic Information

Item Value
RNA id XM_015605419.2
length 5132
RNA type mRNA
GC content 0.49
exon number 32
gene id LOC103026999
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36827033 ~ 36856163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATATGGCGCCTTAGCAACTGGGACGCAGATGTGCTTAGCAACGGTCTGATGTAAACACGGTGAATTTTCCGAGCTGAGGGTTTTAAATGAACGTTTTAAAGCTATTCATTGGCTGAGGAGAGATCTAAAGCCGTGATTTATATTATATCTGTGTAGTGTAACCGCTAGTGTTGAGCAGGAGCTGAGAGCGGGGCGCTGGACGCCGGGCTGTGTGAAGGAATGCAGGGGGAGAGTCTGTGCTGAAGATGGTGTAGCTGAAAAGTTGAGTTTGCTGTAAAACCAGAAGGAAAACTGAATCATGACTCAGAGTGAGATGCTGGGACACAGTGGAGATGAGGAGATTATCAAAGAACTGtgtgtgtgtaatggagtgTCCTTTGAGAAGATTTCCCAGGAAGGGAGTGGAGTCACAGCACTGGAGATGTTTTTCTCTGGTTTTCCCCGGATGGTTGGGCTTTCTCTTTTCCCCAGGCTGACCAGGCTCACCCTTGTGGGACAGAGCATTACACAAATCCAGGGTTTAGAGAACTGTCCTTCACTCAGAGAGCTGTGGGTGGTGGAGTGCCAGATTGAAGAAATCTCAGGTCTAGAGAAGTGCCTGCAGCTGctgaagctttttctttacgaCAACAATATCAGTAAGATTAGCAGCCTGGAACTTCTTACTAACCTGCAGGTTCTGTGGCTCAACAACAACATCATCTCTGAGATAGAGGGCTTAAGCATGCTGGGGAACCTTAGGGAACTTAACCTGGCTGATAATTTAATTGAAAGTATTGGAAACAGCCTTGACCAAAATACCAACCTCCAAAAGCTCAATCTCTCAGGGAATAAGATCAGTTCCTTTAAGgagCTGACCCATCTGACTCGTCTAAGTAAACTGAGAGAACTGGGCCTTAAAGATCCACAGTCCCGGCCAAACCCAGTGTGTATGCTGTGTAACTACTTCACACACATCCTGTACCATGTTCCCACTCTGCAAAGATTGGATTCCTATGATGTTACCAGTAAAGCAATTAAAGAATCGGCTGAGTCTACAGTGACAAAGAAGATGATGTACTATAACATGCGGGTGCACAGCGCTCAGAGACAGTTTGACAACACTGAAGCTAAActccagcagcagaagaagaagcaaaTGCAGCGTCCTGAGGAGAGGATCCGAACACTGAGCTATACACTCAAACATTTTGAGTGTGAGCTGGCTGAAAGCAGAAAGGGGGTAGGTCATCCCAAGGACCAAAACATGGAGCCTGTAGAAGCTGGATATGAGAAGAGAGTTCAACACAAACTGACCACCATCAGACAGAGGATTCAAACCTGGGAGCAGAGAATAGAGGAggTGGAGGCATGTTTTCGGCGAAACATCACTCAGGCATTAGACAGGAAGGAGCTGATGGTTCAATTTCTGGTGATGGAGTTGGAGACAGTAGGAAATATTCGCTTTGAGGAGGGAAATACCAGTGACGCCTGGTTCAGCTCCTGTTATGATCTTCTGCTCTCTCGTTTCTGTGCACTGGATCACAAGCCCCACAACATCACCGGCATTAAGATCAACCGGATCATCCGGGTGCATAACCGTGTGCTCAGACTGCGGTTTGAGGATAAACTGCACTCCATGCTGACCAGTGAGGAACCTCCATTCATCTCACAGAACTACAAGCGCTTCTTGGACTATCTGTTCTATGCACCAGATCCTGAAAGAAGCTCTGAGGGGAGCGAGGTTCTCTGTATTCTTGAGAACGGATTTAAATCAGCTGAAAGCTACAAGGATCTAGATATGGATGGAGCAGTTCCACTGACCAACAGTGTCAGCGTGTATCACCAGCCATGGAAACATGCCACCAAACACGGAACTAAAAGACCAGCGGAGCCCCCACCCCTAACACCTGgTCAGCTGATTGTGTCTAAAGTGTTCCTGGGTCACAGTGTTCCAGCAAGAGATGGAGTACCTGTGAGCTCTGAGTTCTACCCCAGAACTCACTCGGTGTACCGCAAGATCAGCACCAAACAGAACACCTTCAGTTTTGGGAAACCACGCAGCAATGCAGCATGTTCCTCAGACCTGCAAGGGAGCTGTGACTGCAGTCAGAAACAGACTATGTGGTTTGTTTTTGATCACGAGCTCGTCCTGCCTGAGTACCTCATCGACTTCGACTTCATCAGACAGGAAAAGCCCCGGCACTCTCACCCCTTTACTCCAGGCCTCAAACCCTCTGGTGAGCCAGGTGATGCCTCTCCACTGCTCTGTGATAACGAGGCTCTTGATAGAGAGGCGCTAGCCCTGGAGCCAATCCTCGAACCCCGACCCAAACTGCTCAGCCTGGACGAGAAAAGCATCCTGACAGCGGCCCAAGCAAACGTCCTCAGCCAGATCACTGTGCTCAACCTCCATGATAGTGGTCTTACCAAGCTGAAGGAGATCTCCTGTCTGACAGCACTCCGCCATCTGACCATCAGCTTTAATGAGTTCACGCACCTGGATGACATCTCACATCTGcccaGTCTGGAATGTGTGGACGCCAGTTTCAATCAAATTGTGACTCTGGGGGGCCTGCGGGGCCTCGGACGTCTCACACAGCTGGACCTACGCTGGAACCAGCTGACCCACGCCAGGGACGACATGGCGGTGCTGCAAAAACACGCACCATCCCTGTTACGCCTGGACACACGCCAAAACCCCTGGACAACCCAGgGTGAATGTGTGAGGATGGTGGTGTTGGGGAGACTGAGGACTCTCACGCACTTTGATGGTGTGTTAGTTACTGAGGAAGAAGCTGCTGATGCTGAACAGATGGCTACTGTCTCCAAAATCAatgaagcATCTCTTGTGGCTCATTCTCGTGTTGATTCTGATCGCCCACGATGTCTAAGTCTCCTCACTACAGCCCAGCTCCTCACACACCTGTGGCCTTCACCGTGGACACACACTGCAGAGCCTGAACCAGGGTGGACCAACAAAatCACTGCTCTGAATCTGGACGGTCAGCGGTTGGCCCGTATCGCTAATCTGGACAAGCTGGTGAACCTGCGCTGGGCTTCGTTTAATAATAACGAGCTAAGTCATATTGAGGGTCTGGAACACTGCCCCCTGCTGGAGGAGCTGTCCCTCAACCATAACAACATCAGCAGCCTGGATGGTGTGTGCAAGCTACAGCGACTGACCCGTCTGAGCGTTAACAGTAATCAGCTGCAGTGTCTGGATGGCTCCGTGTTGGATCACCTTCCCAATCTCCACTTCCTGTCTGCTGAGAGAAATCTGATCCCCTCTCTGCATGGAGTTCAGAGATCACGCTCCCTGTTTGAGCTTTACGTCGGCAACAACAACATCAGCACCTCCAGGGACATCTACCACCTGAAGGTGCTTACTAGTCTGATCATCCTGGATTTGTACGGGAACCCTTTAGTGGAGAAGTTGGAGAGTTACCGCATTTACGTGGTCTTTCATCTACCGTCTCTTAAAGCACTGGATGGAACCGCTGTGGAGGTGACTGAGTGCGAGAATGCTAAAGATGTATTTGGAGGCAGACTCACGCCGGACATGGTCACTGAGAAACTGGGTATTTCAAACTACAGAGAAATGACAGAGCTGGAGCTGACAGCCTGTTCTATCAGgatgGTGGATCTTGTTCCTGCTGATTTGTTTGTGAACCTGCGCTGCGTCAATCTGGAGCGGAATAACCTCACCTCCTTTAGCGGCCTTATCTACCTGCCCAACATCACGGCTTTATGTTTAAACTACAACCACATCGAGTCGGTTCTCCCACGccagaaaacacaaacacaccacagcCTCAGACAGCCACCCTACCACAAAGTTAGCTCCAGTGGCTACGGACAACAcaacagcaaaaacagcagGGACGCCCTGTGTGGGGAGAGCTTGGAGCCGCTAATGGCCAGTTTGGAGGTTCTGCACCTGGGCTATAACGGCATTTCCAACCTCAGCGAGCTTCAGCTCAGCAGACTGACCAATCTCAAATCTCTGTTTCTGCAaggtAATGAGATGGTGCAGGTGGAAGGTCTGGAGGGTCTGCGGCGTTTGCAGGAGTTGGTTTTGGACAGGAATCGACTGAGGTGTGTGAGCGCGAACTCGTTTAGCGCTCAGGCCGCTCTGCTCGAACTCCATATGTCTGACAACCGACTCCGTGACCTCAGCCACCTGCACACACTCAGCCAGCTTCGCTCACTCCACCTGGACAACAACAAAGTGCAgGATCTCTCAGAGCTGGAGAAACTGGATGCTCTACCATCATTAATAAAACTGTCTGTATTGGGCAACCCGGTGGCTCGGCGCTGCCTCCACAGGCCAGTGGTTGTTCTTCGTCTCCCCGGCCTGCAGGTGCTGGATGGCATCTCAATTACACTGGATGAACGAACCAGGGCTGAGTTAACGTATGCAGAAGGACagtacCCCATTCCCCCAGCAGTAGGTGCTGAAGTGGTCTTTCCTGGCTTATCTCCACTGAACCACTCTCCTGCccgaggcttcagcagctttcAGCACGACATCATCTTCACCCCTAACCTGGACGACTCACACCTCAGCAGTAAAAaTAAGAAGCATAGAGCTGGAGGCACACACTCCCGCAGTGCTCAGAGCGACGGCCGACACAGAGGAGGACTCAGCGGCCACAGAGTCTACATCAGCTACCCCAGTACAGACATTGACAGCAGATTTCACAGCGGGCCCAGACCTCCACTGTAACCCATCATAAGGATAAAGGAAGGCTGGAAATGTGATCTGTACTGCtgtaaatttactgtacaaatgTTTAATGTAGAATATGTTGATTTTGTTTTCAAATGgaaacataaatgtaaatgaagtcactgattttattatgttatattgtaTGAAGTGTATTAATTCACTACTATAAAagaattggtattttttttgcttgtggCTCCCCTACAGTTGGGGAATGTTATTCACCTTTACACCACggcattaaaaacaaataatttattaagcACCCCCTTATGGTCAGCTGATCatgtgcatttgttgacaagcagAGAAAGAGCAGCATCTGAATGGGAGAAGCGTGTGGTGGCTTGGTATAATGGTAAATGATGTTCTACACAATAAATCTGCAGTGTTctactactgtatatatttagacTA

Function

GO:

id name namespace
GO:0044782 cilium organization biological_process

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301207 lncRNA upstream 98944 36726518 ~ 36728089 (+) True G221973
TU301210 lncRNA upstream 98944 36726518 ~ 36728089 (+) False G221973
TU301100 lncRNA upstream 203238 36620288 ~ 36623795 (+) True G221891
TU301086 lncRNA upstream 381661 36443306 ~ 36445372 (+) True G221879
TU301069 lncRNA upstream 436839 36387252 ~ 36390194 (+) True G221872
TU301236 lncRNA downstream 19077 36875240 ~ 36923898 (+) True G221993
TU301248 lncRNA downstream 32517 36888680 ~ 36897632 (+) True G222004
TU301261 lncRNA downstream 124912 36981075 ~ 36991478 (+) False mnat1
TU301262 lncRNA downstream 124912 36981075 ~ 36991478 (+) False mnat1
TU301263 lncRNA downstream 124912 36981075 ~ 36991478 (+) False mnat1
XM_007247559.3 mRNA upstream 59800 36735850 ~ 36767233 (+) True tdrd9
XM_022685053.1 mRNA upstream 95602 36704679 ~ 36731431 (+) True kif15
XM_015605417.2 mRNA downstream 2789 36858952 ~ 36877930 (+) False pcnx4
XM_007247554.3 mRNA downstream 2802 36858965 ~ 36877930 (+) True pcnx4
XM_022685056.1 mRNA downstream 2804 36858967 ~ 36877930 (+) False pcnx4
XM_022685061.1 mRNA downstream 42893 36899056 ~ 36904868 (+) False ppm1a
XM_022685057.1 mRNA downstream 42895 36899058 ~ 36909726 (+) False ppm1a
TU301085 other upstream 417992 36403148 ~ 36409041 (+) True G221878
TU300883 other upstream 770343 36054146 ~ 36056690 (+) False G221737
TU300881 other upstream 770343 36054637 ~ 36056690 (+) False G221737
TU300884 other upstream 771215 36054875 ~ 36055818 (+) True G221737
TU300860 other upstream 854679 35969989 ~ 35972354 (+) True G221728
TU301259 other downstream 120280 36976443 ~ 36987654 (+) False mnat1
TU301271 other downstream 144922 37001085 ~ 37007865 (+) False slc38a6
TU301269 other downstream 145065 37001228 ~ 37007865 (+) False slc38a6
TU301771 other downstream 1879796 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 2038939 38895102 ~ 38898819 (+) False oip5

Expression Profile