RNA id: XM_015605859.2


Basic Information

Item Value
RNA id XM_015605859.2
length 4111
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103023691
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18233209 ~ 18287507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctctcagcagtaagaagcagcagcagcagtatccTGTAATCAGGTCACATTTCAGCGGAGGCTcagcatcagtgtgtgtgtctgtgaggaGCTGAGGACGCTGTTCACCGCTCTGCGCTGCTGATCATCCCGTGTGAGGAGTCATGGTGCTGCTGAGGGTCATGGGGCGCCTACTCGTCCCGTTCGTGATGCTCGTGGGTGTTTCGGTTCAGGGCGACGTGAAGAGCGGGAAAGATGCGGAGAAGAGCGGGAATTTCATGGAAGACGAGCAGTGGCTGTCCACCATTTCCCAGTACAGCCGCAAGATCAAGCACTGGAACCGCTTCAGAGATGAAGTGGAGgaTGATTATATCAGATCATGGGATGGAAGTCAAGGCTCAAATGAAAATGTGGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGCAGCCGCCACAAGGTGTGTGTTGCCCAGGGCTACCAGcgtgctgtgtgtgtgaaccGCAAGAAGCTGGAGTACAGGTTGAAGGACCCAGCCCTGGGACAGCAGGAGAACAGCTGCAAGCCCTGCCCTGTGTCTGCTTCTGGACCTGTGTGCGGTTCTGATGGACATAATTATGCTTCTCAGTGTAAGCTGGAGCAGCAGGCATGTCTCACAGGGAAGGAGCTGAGTGTGAAGTGTGCCGGTTCCTGCCCATGTTCCCCCACAGCTGCGCCTAGCACAGAAACAGACAGCAAACACGAGAGCTGCACCGGCCAGGACCTGGCAGATTTGGGGGATCGCCTGCGGGACtggttccagctgctccagggCAACGCCAAGCAGAACAGCACGAGCAAGCCTGCAGCCAGCTCTGCATCAATTTTGGACCGCACTCTAGTGGCGACCTGCAAGGACTCCATCGGATGGATGTTCTCGAAGCTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTACGAAGTGTGTATTCGGCCTTTCTTCAACTCCTGTGATTCCTACCGTGATGGCAAAGTCACAACAGCCGAATGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGCTAGAGAGGATCCAAATGCAGGAAGGAGCCAAGAAGAAGCTGGGTGCCTTCATTCCCAGCTGTGATGAGGACGGCTATTATAGGAAGCTGCAGTGCGACCAAAGTAGGGGGGAGTGCTGGTGCGTAGACCAGCATGGAGGAGAGCTAATGGGTTCCAGAATCCATGGCAACCCTGACTGTGATGAGGTAGCTGGTTACTCGGGTGATTTCGGCAGCGCTGTGGGCtgggaggacgaggaggagaAAGAATCAGAAGACAATGGTGAGGAGGCTGAAGAAGAGGAGGGGGAGGTGGGGGAAGTGGATGATGGTGGATACATCTGGTAGACCACATCACAAATGGCTGCATGGTCAAATATAGCTTTCCTCTGGCCACTGGTTCAGAGGCAGCTCCATCTCTTGCCGACACAAACCTGGTGGAACCTGGAGGGTTGGACATCTTTATACTGCACTCTGAACAACAGCATTGACTTGGGGGGATGGGGTGGCTGGGTAGTGATAGCTGTAGTGAAATTCTGGGTTTGGGGAAGAGTTTGAATAATGGTACTATAAATACTTGTGAAACATCTTTTCTTTTGTTGTATGTGCAAGAGTGTGCTCTCCTGATAACGTCTCTAGCATCAGCAGTCACAAGCTCAACTCTAGAAGCTCGATAAAAACGGACAAACTGGAGCTTAGCCCATGCTGTACAGTGCTTCATCTCATCTGTGACGTTGGACATGTTGTGCCAGAAGCATAACAactaaaatacacacatttaccgCTAAGTATTTGAAAAAGGTACATTTTAGCCTCAGCGTTTTAGGGTAGCCTACAGATCTGACTAATAAAACTGCAAGTGTAATAAGGTGGGAATGCTTCAAGCCTAATACATTTAGCCTAATTCTTTTGGAGTTGTCATTAGTGTTGTCCAAACAAGAACAATGTGAACTAGAGTCTGGTCACTTCAAACCATCGGTATGTAAATTTTTTGGACATAGATGTTAATTGAATTAATATTTTAGCAGCACTGTAACTTTTCTGATTAGGCCACAGCAGAACTAGAGCTCACTAGAGAACGAGAGCCAAAGGCTAGAGCCAAAATTACCCTGAAAGCTGCAGCCACATTTCTGACGACCTGGTTGCCAACACATTATCTGGCTACCAAAAGCCTCAACATAAATTGATAACACTGCAGAACCTGTCACAACAAGTTTAAGGCACAGTTAAGACTAGCTCTAATTGGACAGTATGGCCTTAACATTAATTCTTAATTTTCAGCGTAAGACGGTTCTTCAAGTGAACCAATACCTTTAAGGCTTTCCGGCTTcaacatatataatattaaatccCACCGAAACTGGATATACTAAAGCTTATTTCACTGTAAACACTTTTATGACACAGAACAACTCTGAACCCTCTCCAATACTTCGTGCTTTCTTAAATGAAATGGAGTCGCTGATCCTTTCGAATTCATTCTCCAGTCTCCGATTTCTCTCATAATGGAATCTGCTTAAGCGAAAGTAGTTTAAGCTGAAATGCATTACCTCTGATGTCACTATGAATACAAGTATGAATAGTAGTGTGGAGAATTTGCAACCTGACAATACTCCCACCCGCAGACACCCAGAGGGACCAGTCTGTCTTTTTTATCTGTCTGCTAAACAGATCCACCCTTCATCTATGGTGAAATATGAGTCTACTGTACTGTTACTAGGTGTAAATATTTCTGCTGCAAGGGTTTTAAGTCTTGGTTTACAGCGCAAACAAAAATCCATTCATGTACCACACACTCCTCGCCGTAAGACACTCCACTCTTAGTGTAAGCGCCATTTCCGTGTTTTTTGGGATAGAAATTTGTCTTCGCAGGTTTCAGGATGACTATGGTGTTGGTTCATCTAGAAATCATCATGCTCCAGTGATTTCATGCATACAAAAATACTTGAGGCATTTGCAGTAAACACTGTGCAATTAGTGTCGCCCACTGAAACAATGATGCCATACTTAGACATCCCCCTGAGAGCCCAGCTCTGAAGAAtgcctttctctgtctctgctcACCACCAAGGACATTAGGGTTGCACGTAATACTTTACATGCAGAGCTTAAGTGAGGATGAATTATAGATTTTATCTGGTACGGTAATGCATTCAGATAGACCCAGGCTGGAAGCTTTAAGTAAGTTTTGGAGAATGcatcttatttaatgtttttttttttcttctcagaaATAAAAAGGTTCAGCAGGAAGGTGTAAATCAGTTGACTTTTTTCCAAATATACAGCTAATATTCGTCCATTgacagtgagtgtgtttatgtgcacttCATAATCCTTACTGATTAAGTATTTCTCAATACCCTTATAAGGAGTAATCCCAGATTTCTCAATCTGTGCATGCACGAAAACAGACCCTGGTagcaaaaataaacaagcaGCATTGATGGCAACACTTTAGAGGCAATGCTAAAACTCAAGGATTTAAATAATCTTCATCTTCTAGCTGACTGTGTGTTCATAATGTGTCTCAATGTGttgaataaaaatgtgaattttgtgttttacttaAAGTTTGTCACATCTTTTTCTGTAAGATTAATGGCTGGTTGCATTAATCTGATCCGATTATTGACCCAGTTTTCCAATTATCTGTTGATACAAGTTCTCagatgttctgcagtaatcagattatgaaatGCATGTAAACGCACTCAATGACAATATGTTATGAAGAACCTCAGATAAGGTGTTCGATTCGTTTAGAAGACAGTCTCACAAGTAGTCAGATTGTGAGATCACTGCTTTCATGTCTTTCTCAACAGTGCCACATCTGATGCTCTTCAATGTGGATTTGCTAGCCTATGATTATACTGATCTGTAAACACCATTATTGTCAATACTTGGATTCTAAAGATGAAGTGTATTTGCCCTGGCAGTTGCATTATATTTGCATTTAGTTGCATGTTTTTGTCCAGAATTGTCATCTTTTGCCTCAGTATGATTATAATTAAAGGCATTGGGCCCACATACTGTA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08136 SPOCK; testican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294861 lncRNA upstream 12640 18187590 ~ 18220569 (+) True G217364
TU294856 lncRNA upstream 65309 18163382 ~ 18167900 (+) True G217361
TU294853 lncRNA upstream 71437 18099954 ~ 18161772 (+) True G217359
TU294947 lncRNA downstream 136323 18423830 ~ 18424763 (+) True G217420
TU294961 lncRNA downstream 394455 18681962 ~ 18689693 (+) True G217431
TU294964 lncRNA downstream 400865 18688372 ~ 18695794 (+) True G217433
TU294971 lncRNA downstream 410486 18697993 ~ 18699151 (+) True G217435
TU294975 lncRNA downstream 426544 18714051 ~ 18714310 (+) True G217438
XM_007249502.3 mRNA upstream 20876 18202338 ~ 18212333 (+) True LOC103023375
XM_022684434.1 mRNA upstream 83410 18142595 ~ 18149799 (+) True cuedc2
XM_007249492.3 mRNA upstream 193862 18004253 ~ 18039347 (+) False pax2
XM_007249508.3 mRNA downstream 24386 18311893 ~ 18317228 (+) True eif4ebp2
XM_007249510.3 mRNA downstream 35083 18322590 ~ 18337821 (+) True LOC103025593
XM_022684756.1 mRNA downstream 62233 18349740 ~ 18353030 (+) True rps24
XM_007249517.3 mRNA downstream 62233 18349740 ~ 18353030 (+) False rps24
XM_007249518.3 mRNA downstream 62233 18349740 ~ 18353017 (+) False rps24
XR_002651919.1 other upstream 1057476 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1225672 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 4885576 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 4917047 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 4918009 13315112 ~ 13315200 (+) True trnay-gua_10
TU294912 other downstream 24399 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 455726 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 549855 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 880356 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 1055487 19342994 ~ 19345401 (+) False rrp12

Expression Profile