RNA id: XM_022684461.1


Basic Information

Item Value
RNA id XM_022684461.1
length 543
RNA type mRNA
GC content 0.59
exon number 2
gene id LOC111195944
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29561192 ~ 29561840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCCCGGTCCGTAGACGAACACGTCACCCACGTCCGACGGgttctccagctcctcctgGAGAACCACCTCTTCGTCAAACCTGAGAAGTCCCAGTTCCATGCGCAGACCATCTCCTTCCTGGGTTTTGTTGTGTCTCACAACACACTGCGCATGGACCCCACCAAGATCAAGGCAGTGGAGAACTGGCCCCAGCCCACCTCGGTGCGCCTGGTCCAGCGTTTCCTGGGCTTTGCTAATTTCTTCCGTCGATTCGTGAAGAATTTTAGCTCTGTGGCCGCCCTGCTAACTGCCCTGATAAGGAAGGCGTCGGGACGGTTTAGCTGGTCCACAGAGGCCCAGGAGGCATTTGATGCCATTAAATGCCTGTTGACCAGGGCCCCAGTTCTCCAACTGCCTAATCCGGGACTTCCGTTTGTCGTTGAGGTGGATGCCTCTGAAGTAGGCGTAGGGGCAGTCCTGTCCCAGCGATCGGGGCCTGGGGGCCGACTGCACCCTTGCGCCTACTACTCCCACAGTCTTTCCCCTGCGGAGCAGAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298835 lncRNA upstream 44431 29515986 ~ 29516761 (+) True G220264
TU298827 lncRNA upstream 70561 29490371 ~ 29490631 (+) True G220258
TU298798 lncRNA upstream 120874 29440026 ~ 29440318 (+) True G220236
TU298787 lncRNA upstream 141012 29411547 ~ 29420180 (+) True G220227
TU298761 lncRNA upstream 264833 29296087 ~ 29296359 (+) True G220209
TU298865 lncRNA downstream 4676 29566516 ~ 29566717 (+) True G220288
TU298870 lncRNA downstream 70782 29632622 ~ 29634991 (+) True G220291
TU298869 lncRNA downstream 74221 29636061 ~ 29640401 (+) True LOC103047316
TU298894 lncRNA downstream 82833 29644673 ~ 29644936 (+) True G220314
TU298909 lncRNA downstream 184605 29746445 ~ 29753596 (+) False LOC103046096
XM_022684713.1 mRNA upstream 33106 29523340 ~ 29528086 (+) True LOC103022910
XM_007235269.2 mRNA upstream 40217 29517504 ~ 29520975 (+) True LOC103021558
XM_007235275.2 mRNA upstream 45472 29514154 ~ 29515720 (+) True LOC103023222
XM_007235276.2 mRNA upstream 58673 29501006 ~ 29502519 (+) True LOC103023539
XM_007235270.3 mRNA upstream 78152 29470341 ~ 29483040 (+) True haao
XM_007235267.2 mRNA downstream 53265 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA downstream 53265 29615105 ~ 29628670 (+) False LOC103047633
XM_022684462.1 mRNA downstream 74291 29636131 ~ 29640401 (+) False LOC103047316
XM_007247398.3 mRNA downstream 587593 30149433 ~ 30153973 (+) True LOC103028857
XM_022684980.1 mRNA downstream 885613 30447453 ~ 30467966 (+) False LOC103027087
TU298732 other upstream 419174 29141367 ~ 29142018 (+) True G220194
TU298587 other upstream 840531 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 1011872 28490846 ~ 28549320 (+) False plekhh2
XR_002651963.1 other upstream 2324581 27230162 ~ 27236611 (+) False LOC111196018
TU298921 other downstream 226099 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 226099 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 226099 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 226099 29787939 ~ 29793496 (+) False G220336
TU299278 other downstream 1387172 30949012 ~ 30951941 (+) True G220610

Expression Profile