RNA id: XM_022684520.1


Basic Information

Item Value
RNA id XM_022684520.1
length 1035
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC107197796
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7734675 ~ 7742087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGAACAGCGGACGATTTAGGAGACGCACACTCGCTCTGCACCGGAAAACCCGGAAGAGAAGGGATCACGTGACCCAATGAATTGGACAACTAATGTTACGCACCTGGAGCTGGGGCTATGGGCCAAGATTGACAAACCAGTGCTTGCTTTCATTCTGAGCATTGAGATGGTGATTGGCATACTAGGAAATGGTTTGGTCCTGGTTGTTAAAGTTGTGTGTAGGGATCAGTTTCAGTGTGATTACTGGGTGCCGTTCATCAGTCTCACTCTGTCTGACTTCTGCTGTTCTGTTCTGATCATAACCGGCTCATTCCTGGCCGTTTTGACTGGAGGCCAGGAGTCACCGTGGTGTGAGGTGGTCAGCCTGTTCAAATTCACCTTTATCACTTCGTCTTTTGGAAGCGTAGGACTTCTCTGTCTCCAGCGTTATTTGGGTGCAGACTCCAAAAGACGATGCTGGTCTGTCATCGTTATAGTGACCTGTCTGGTGTCGTGGTTGACAGGTAGTGTGTTTGGAGTCGTGCCAGTGGTCTATGACTGGATCAGGTATGATTCTTCTGAGATGCTGTGTGCTGTGTTCTGGGAGAGCAGCTACTCGGACATGTTGATCTACATCCTTTGTGCTATTACCATCTCCATCTTCCCTGCGATGCTTATCATGATCATCTTCTCCCTGTTGACCTCGTTGGGCTATGGAAAGAGTGTGAGCAGCACTGGTGATCTGTCCTCTGTCACTCCTCTAGTGGTGGGGTCCTTTCTGGTCTGCTACACTCCTTTCATCCTGTCCGAGCTGATTCTACTGGGAAGGCTGGACCTCTCACCatctccagactggctgaggaCACTGTCGTCAGTGTTGGCATATCTGGACTGCAGCCTGAACCCCATCATCTACTGCACTAATCAAGGTTTCCGAGAGGCAATGCTCGCACTGCTCTGGAACACCAAAAAGACGACTTTCCCTGAGCCTGTGCTGACCTGCGTAAAATGTATAGAAGTataaatctaataataaaatgaaagaaatcttTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291164 lncRNA upstream 28733 7702646 ~ 7705942 (+) True G214533
TU291123 lncRNA upstream 83497 7610083 ~ 7651178 (+) True G214502
TU291114 lncRNA upstream 86678 7573165 ~ 7647997 (+) True G214493
TU291068 lncRNA upstream 312030 7420644 ~ 7422645 (+) True G214465
TU290952 lncRNA upstream 661840 7067947 ~ 7072835 (+) True G214365
TU291281 lncRNA downstream 1113 7743200 ~ 7743407 (+) True G214614
TU291279 lncRNA downstream 2285 7744372 ~ 7745027 (+) True G214613
TU291280 lncRNA downstream 2398 7744485 ~ 7745072 (+) False G214613
TU291286 lncRNA downstream 18448 7760535 ~ 7760783 (+) True G214618
XR_002651940.1 lncRNA downstream 33549 7775636 ~ 7776179 (+) True LOC111196001
XM_022684421.1 mRNA upstream 35371 7682038 ~ 7699304 (+) True LOC103023957
XM_022684420.1 mRNA upstream 150516 7551920 ~ 7584159 (+) True LOC103045994
XM_022684518.1 mRNA upstream 185470 7529580 ~ 7549205 (+) True LOC103045679
XM_007234308.3 mRNA upstream 253001 7466177 ~ 7481674 (+) True pkd2
XM_007234307.3 mRNA upstream 253001 7466185 ~ 7481674 (+) False pkd2
XM_007256111.3 mRNA downstream 6882 7748969 ~ 7757553 (+) True LOC103022802
XM_007256112.3 mRNA downstream 6882 7748969 ~ 7757553 (+) False LOC103022802
XM_007256108.3 mRNA downstream 68891 7810978 ~ 7813036 (+) True pold4
XM_007256107.2 mRNA downstream 73736 7815823 ~ 7840389 (+) True LOC103021660
XM_007256106.3 mRNA downstream 114075 7856162 ~ 7877118 (+) True LOC103021346
trnam-cau_43 other upstream 1253046 6481558 ~ 6481629 (+) True trnam-cau_43
TU290727 other upstream 1325607 6399076 ~ 6409068 (+) True LOC111196031
trnak-cuu_9 other upstream 1408618 6325985 ~ 6326057 (+) True trnak-cuu_9
TU290693 other upstream 1450307 6283781 ~ 6284368 (+) True G214175
TU290451 other upstream 2213000 5521184 ~ 5521675 (+) True G214006
TU291318 other downstream 68906 7810993 ~ 7813032 (+) False pold4
XR_002651890.1 other downstream 114075 7856162 ~ 7877118 (+) False LOC103021346
TU291488 other downstream 368861 8110948 ~ 8111325 (+) True G214773
TU291737 other downstream 1216212 8958299 ~ 8961770 (+) False LOC103041196
TU292392 other downstream 2833408 10575495 ~ 10583088 (+) True sprn

Expression Profile