RNA id: XM_022684565.1


Basic Information

Item Value
RNA id XM_022684565.1
length 2507
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC103038211
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23418114 ~ 23421870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACTTACTCTCAACTATTTAAACTCTTCCAtttccacaaacacacacacagcattagaTACCCTGCAGCAGCCTGCACAATCCACTGATAACATAAGCTTTACCATCAGGACAACAATGCCTGAGGAGGAACTTAACAGACTGGAGTGTCACTTTACCTGGAACTTACATAAGGAGGATGTTGATCTTAATTTCCAGGAGATCAAATTCACAGAGAGTCTGTCTGTGGAAAATCAGGACAGAGAgaatttcacactgaaatatctcAATTTTCTGGCCTACATTAAACACTTGCAGGGTTTCAATGATAAGGCACTTGAGTATTtggaaaaagcaaaagaaattTCAGTTTCCATTGTTACGTATGGAAATTTAGCTTGGCTTCACCATCACATGGCTAATGATGCACAGGTTCGAGTTTATTTGGAGAAATTGATGGAAATTTCTGGTGCTGTCTCTGATCCAGCAGAAGCTGAGTTGATCCGTGAGGTAAAGAGTCAAAAGGCATGGTCTCTTCTGTGGTTCTCCAAAAAGCACTACAGCAGGGCCAAAGAATGCTTTCAGGAGGCCCTACAGCAAGAACCCGAAGACAAGGAGTGGAACACTGGCTATGCCTTCTCCCTGTTCAACCTGGAGGGCCTGGAGATCAGGGAGGATATGCGTGTGCCTTTCGAAGAGTCGTCTGCAGTGGCCCAGCTGaagaaagctctgaatctggaCCCAGACAATGCCATGATCCATGTCTACCTGGGGCTGAAGTGTAACAAGAACAAGAGGAACGCTGAGGCATGGGTGCACATGAGGAAAGCTTTAAAAATGGCCCCATACGACCTTAACATAGTCTTGTTTGTTGCCAAGTTCATGAAGAAGGAGCAGTGTTATGACATGGCAATGGAGGTGCTGCACAAAATGCTGAAGAGAGCTCCAGACTCCTCCCGTCTGCATCATGAACTTGCCAACAATTACCGCTGGAAAGCCCAGCAGATAAAGGATATACACAACCCACATCTCCTGCGTCTCTGCGTCCACCACGCGGAGGAGGGCGCTCGACTCAATCCAGATTTTCTGTATCCGCAGATGGAGCTAGCGCTCAGGTATTCTGAACTGAAGAACTACCTAAAAGCAGAGCAGAAGTTCCAGGAGCTGTTTGTCCACCCAAATTTGAAGCCAGCTGATCTTCAGGCTTGGCATCGCCATTACGGAGACTTCCAAATGTACCGCCTGGGCTCAGAGGCTACAGCTGTAAAGCATTATAAAGAAGGCCTGGCACTGCAAAACATCTCCACTGAATGGAAGCAGTGCAGAAACAGACTGTATAAAGTCCTCCGCAATGACCGAAAAAATGTGTACCAGATTCGGGAGCTGATGAATTCTTTAAGGAGAGAAAACACTGGGAATAGTGAGGAGTAGACAGCATTTGAGATgagtcagataaaaaaaaacatgtatgtttatttttgaccatATTTAGTTTCTCCATCATTGGAACCATCTAGCTGCTTTAAATACTAGAGCTGGGATACGATACCCATCACAATATATTGGGATATTGTTGgccaaaattatatatttatattttcaagttttctaaaaaaaaaaaacgattataCTATTAAAACACACCATCGTATATGTGCAGAGATTCAGAGTAAGAGGAAACCTTTCTAttcatccaatcagaacagtgggatctgaagACGGGAAACTTGATTCTAAATGAACCTAAATTAAGTCTTTCAATCGATAGTGTGTTTTTAAGAAATTATACAGTATAGCAAAGCAAAATATCAAGAAACTTAGACTAATCAATATTCGTGTACATTGTTAATAATTATGGATAATTATATCATTACAAATACTATAAAAGCACTTGGAATAAAGAATCATTACACTGCCTTTCATACAAATTAAGAGCATTttctcattggacagcaatATTATTTATGAACTGTAACTGTCATTATGTCTAACATATAGACATTTAAATGATTaagagctttaatttatatacatatcAGTATTTCCAAACATATGACTAATTAGTCTTTAACCAAGAATTTCAGCTACGAATCATTCAGGCATATAACAGTACTACTACAAGTTATAAAATGGCTTAAGGTGGAGCACTGCGCATATTTgtggtttgtttgtactgacACACCCATTCTAACCTCAAACTGGGCTTGTTTATTACCTGAAGAGTTTAACCCAGTGTCtaagaacagtaaaaaaggGAAATTGTATTCTACAATTGTATGTATGTTCTATAGTCAATTATCTAATAAGGGCTATACTGGGAAACATTGGGGCATTCAGTTAGCTTGTTTGTTTTACACAAATCCATGTAAACACATCTAAtgcaattttctgtttttactttagttattgctataaaatatatgtgtatttatactaaacatcaTATGAAACATCCTATGTAACCAAACGTtgtcaacacattttttttaaaatgtagtctttacccaataaataaatatttgaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296577 lncRNA upstream 126037 23291508 ~ 23292077 (+) True G218561
TU296457 lncRNA upstream 600000 22797312 ~ 22818114 (+) False kcnma1
TU296486 lncRNA upstream 613648 22803912 ~ 22804466 (+) True G218477
TU296483 lncRNA upstream 689614 22727646 ~ 22728500 (+) True G218474
TU296463 lncRNA upstream 883693 22533993 ~ 22534421 (+) True G218455
TU296595 lncRNA downstream 16364 23438234 ~ 23446098 (+) True G218570
TU296594 lncRNA downstream 20032 23441902 ~ 23446098 (+) False G218570
TU296605 lncRNA downstream 88015 23509885 ~ 23606964 (+) True G218576
TU296688 lncRNA downstream 274707 23696577 ~ 23697870 (+) False G218651
TU296695 lncRNA downstream 287714 23709584 ~ 23714345 (+) True G218654
XM_007240293.3 mRNA upstream 3693 23409098 ~ 23414421 (+) True LOC103038538
XM_007240294.3 mRNA upstream 122432 23292110 ~ 23295682 (+) True znf503
XM_022684875.1 mRNA upstream 604339 22563798 ~ 22813775 (+) False kcnma1
XM_022684451.1 mRNA downstream 2739 23424609 ~ 23433147 (+) True LOC111195938
XM_007240272.3 mRNA downstream 361935 23783805 ~ 23834228 (+) True tet1
XM_007240273.3 mRNA downstream 361935 23783805 ~ 23834228 (+) False tet1
XM_007240270.3 mRNA downstream 413971 23835841 ~ 23841310 (+) False LOC103032634
XM_007240271.3 mRNA downstream 414051 23835921 ~ 23841403 (+) True LOC103032634
TU296278 other upstream 1199254 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 1199254 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 1321462 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 1321462 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 3002471 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 274707 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 637341 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 1420432 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 1740072 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 1835080 25256950 ~ 25302587 (+) True G219171

Expression Profile