RNA id: XM_022684567.1


Basic Information

Item Value
RNA id XM_022684567.1
length 5492
RNA type mRNA
GC content 0.46
exon number 38
gene id cfap43
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9632391 ~ 9653852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACCAGCAGCAATGCTAAAATTGAATAAGAAAACAGCCTGCTCACTGATGTTAGACCTCGCAGCCAATAGGAATTGACAGAGGGTATCACGTGCTTTTGAGGCGCGCGAGACAGGTTGCTATGGGAACATACACACAGCTTCTTTGTGGTAGATCTGAGCAGCGGCTCCAGTAATGGCTGTTCTGGAGAGTTTGGAAGTGAGGTGGGTTCAAGGAATCACCAGCAGCAATGTTGAATTTGTGGATAAGAACACAGCCTGCTACATATGTGGGAATTACATAGTTTTTCTCAACATAAAGACAAGAATGAGGAATATGCTTCAGTCTCCAGGCAGTGGCATTGGATCCTTTACAGCAAACAGCTTTTCCAGGACTCTAGCACTTTCTGAACAGAAACTTCATCCATCCATATTTGTTTACAGTTACCCTGAGCTTTCCTTACGATGTGAACTTAAAGgCACAGCTAAACTGGCTTACACGGTGTTGGCACTGAGTGATGCAGGTCCATATTTAGCCTGCTGCTCGTCTCTACCTGATTACACCATTACAGTGTGGAACTGGGAAAGTGAAGCTCCAGTTTGTACCCATCCACTGACTGAAGAGGACATTTCAACTCTAGCTTTTAATCCAGTTAACTGGCAACAAATCTGTGCAGCGAACTCAAGATCTGTAACAGTCTGGAATATTGAGAAAAGTAATGATGTTCATATAATGAAACCCAGTGTAGTTGACCTCCCTGCAGCTGATGGTTCTGCTGTTGTGCGAGAAGTGATCTCCTCTCATGGCTCCAATGGGAAATTGACATACTATGGTCCTCAGATGCCAACTTCAGCTATTGCGGGGCTCAGTGGTGACCGGGCGGAAAACTTTGtgCCCCAGGGTCAAGTGAAATCAAGACTTTGCCCAAGTGCCATCTGCTGGTCGGCCTCCTCACAGCTGTATGTGGGAACCAGAGAAGGTTTTCTGCTGCTAATAAACTCTGAAACTCTGCTTGTCACGGTTCTCTACAAGACACTTATTGAGGGAAATCCTTCAAATGAACTAGtcGACTGTATGGGTCTGCTTATGCAAGAAGGCAGTTTCCAGAGCCTGGCACTGTGCAGTAATGGGATCTTTTCTACAGGAACTGATTGTGTTTTACGAAACATCCAGATTAAAGGGAATCAGGTTGAGGTTGTAAAGACGTTGGCTATGGAGGAAGCAGCCTCCTTCCTGTGCTGTTCACCTGATTATGAAACACTGCTGCTCTCTTCCCCCACTggatgCATATACAGATACAAACCAGGGCTTGCAGACAAACCTGTGAAGGTGCTGGATGTTCTGAATGGAGACTTTGTGGCTGCTGCTCCATTatacactgaaaataacatcTGCGTGTCAGTCAGAGAGTCTGGAGAGCTGCAGCTGTGGTCACTGGATGCAGGAATCTCTATTGCTTCCATCTCTTTGCAGACAAATGTGACCAGCTTGGCGTGTTGCCCGATTGCCCAGTATGTTGCAGTGGGTACAGTGACTGGGCATGTTCTGTTTGTGGAACTCACAAGAAAGGAGGAACCTCGACTGGTTCATAGTGTTCACCTCTACCAGGTGCCTGTCAGTCATTTAGTGTTTGATCAAGGAGGCAATGTCTTAATCACAGGAGCATCAGAGCCTCACATATTTGTGCTGGATGCACGACCATCAAAAGCGTTTGAGGTGATTGGGTACACAGtaacaatAGGTGCCACTGTGAGCCTGTCCACCCAGTTTGTAAAAGAGAGCAAACAGATAAAGGTGCTGGTGCTTTGTgatggagaaaaagaggaaagaaaaaacaaggaaCATAAAGAGGGGAATGTACTGCTGCTGCTCTCAATATCTCTGCAGCAGGTCACAGTTTCAGGAAGCTGTGTGGACCTGCATGGTGCCCTTCGTGAAGATGTTCTTCACAGCTGTGTGTATGAGACTCCAGACTATTTGTCTTCATGTGTTCTGGGTACTAGAAAAGTCTTTGGCTATTGTCAGCAAAAGAAAGTCCTGCAGATATTCCAACTTCCAGAGCTTGCAAGTAAATCATCCAGCACAGAGGAACCTCTTCAGCTGACtccagagaaagagacagaagggCATCCTCTGGGCCCTGCGATTGTGAATCTATCACCCCACCAGGACTGGCTGGCCTCTGTCGGCAGAGATGGACTGCTACGCATCTGTGATGTCTCCAGTCTGGAAATATATGTGCAACATCAGTGCCACTCTTCCTGGCTGGGAGGAGTTTGCTCTGTGTCTTTTACACCTGACAGTCAAACAGTCATCACCACTGGCCTTCGAGATGGCTCTCTGGTCTGTAGTAAGCTCAGGTTAAAGACATCTGGAAACAGTAAAGCAAACACAGCTACCCAGTACAGACTGTCCATGGTGGAATCCTTTGAGGAGTTAATATTATCTGAAAACCCTGTGCTCAGCCGCATGACTGACTTGGAATTACAGGCtcctcacacacctcacacagcTGAGgtCAGTGAAAGCAGTCACGTAACCAACAAGGATGAGAGCAATATGAGTCAGCCTTCTGCATCTTCATCCCATTTCACATGGCTGGATGAGAAGCTAGATGCGGTACTCAAAGAGGAGAGCCAGCAGTTTGCAGGAAACAGGGAGAGCATCAGGAATGGCCTTAAGGAACTGAGAGAAACAATTCAGGCTATGATGCAGGAGAATGAGTCTCTGCCAGACATGGAGAAGCTGGAGCTGCATGAGTTTAACCTGGACGTGGAGGAGCAGAAGAGACTGCAGGCTGAGGGAGAGCAGGAGGTTGACAGGGTACGAAAGGAGATTGAGCTGGAAAATCTGGCTAAGCGCTATCAACGTGAGGTTCTTAAGAAAGAATTTTGGGACCAGATGAAAGTCAAGGGGAAAGCCATTAAGGCCTTCCACAGTGAGCATGAAGTGCAGAATTACCCTATGAAGGAACGCACAGCAAAGGAGCTGGAAGAGCTTCATCGGGTGGAGACTATCCGACAGACTGAACTATCTGAatcaaatCTTCAACAAGAGACTTCCGAAGAGAAAAGCAAGCCTCCAGTAGAGGGAGAGGAGAAGGATGAGGCAGAAGGAGATGCAGCACAGAGCTTAGCTTTAACAGGCAGCCTGAGTCCTCAATGTGGGGGTTTTAACCCTTACTTGTACAGCCAAATCAGCATTCAGACCAGAGAGCAGAAACTTAATCAGATCACCCTGCTACAGgatgtTATCTACAAAGTGAAAACTGCTTTTAATGAAGAATTTGAGGCTGTGTATAAGCAGAAGGAGCAGGAGATCAGCCGTGTAAGAGACAGGAACAAGCGCATCACTGACATTATGACTGAGCTGGAGGTGCAGGAGGTTCTGTGGGAGCCAACTCTTACTGACAATGAAAGACCAGAGAGAGCACTGACCGTCAGTGACTCTGAGATAAAGGTAGAGAAATATCTGACCCCTGagcagatggagagagaggagcagcagagaaaagaagaggagcAGAGGCAGCTCGCAACAAAGGGGGACAATATCAGAGACAGAGCGCTGGTTTATATGATGGATGGGGTGCTTGAGCTTAAGAAAGAGGACATTCTAAGAATGGAAGTGCCACAGCCTGAATTCATGACAAAGCCAGAGGTACAGTGgacagaggaggagagaagaagCTACAAAGAATATGAGAAAAAGACTAAGGAGCTCAGAGAAGAGCAGGAGAAATACCGAAAGATCTTGGAGGCAGAGATAAAAAAACTGCAGACATCCATTAAAGATGCCACTCAGGGTTTTGATGGAACACTCAGTAAGCTGTTTGAAAAGAAGGTGAAATCAGACATGGCTGTACATCAGGAGGAGCTAAAGATTGCCAATTTAGCCTATTCCTTAATGATTGAGGAAGAGATCCTGAACAGAGAGAAACATCTGACCTACAAACTGGAGATGGCAAGAATTCTTAAGAATGACATGGGGGACGGTCTTAAAAGACACAGAGAGGATGTGGAGGAGTTTCAGAAGATATATGACATCGCTGTAGCTGATGATAAACTTCTTGACAAAGGATTTCGCAAAGAGTTTGCTGATGTTCCCAGATATTTGGTTGACCAGCTCTACAAGCTTTACAAGCGCAGACCCAGGGTGCAGAGGTTTAGGACTCAGACTGACAGCACAAGCCCGTCCTCCATCAGGCCTCTGTTAGGCcaagcagcagcagagggatCCCTGGATATGATGAAGGCCATGGAGGAGTTGGATGCTCCAGAGCACATGCCGGAGGATCTGGACTTACCTGTCTGGGAAAGATTCTGCTTAGCCAGGAGAGCTAAAGTGGAGAGTGAACAGCAGGtgaagatgaaggcattgaccTTAGCAGAGATGCAGGCTTTTCTACAGAACCGAACAGATGAGGATGAGAACCTGCAAATGGAAATAAAGACTCTAAATAATGAGCTCAATGGCTTGCGTGAAGAGAGAATGAGGTTCTGCCGGGACCCTATGGTGCAGATTGTGATAAAGCAGGGCCAGGTTGAGCTGGAGTCTGGAGACTTCATTGCAGACTACTCTGATGCTGTGCTGCTCCACCGCAGTGTTGTTGAGGAACTGAACAGCGTAATTAGGGCTTTAGGAGAGCAGAAGATTGCAGGCATGATAGAGCGCAAAGAAATCCGTAAGGGGATCATCCAGCAGGAATGGGAGCACAAGAGGATGACTATGCAGATGGAGGATCTCAGCAACAAAGCCAAAGACATTCAAAGACTTCATCTCAATCAGGAGATTCAAGAGTACCTGAGTGAGTCAGACTATGACAACAGAATGTCAAAGCAGGTGTCTGCTCTAGAGAAGACCTCAACATTACAAGAGAAGACTTATCAGAAGAAAATTGAGAACTGTAAGAAGCTGATAAAGCAGCTGAACAGACAGGCTGTGCTGAAGAAGGAGAAGTGTGCAGCTCTTGACCTGCAGGTGGTCAGCATGGAAGTGGCTGTtgcagaaagaagaaaaatctaCGAAGCAACAGCAACAGAGGAAAGCCAAGAAGATGAAGTAAAGCAGCGCTATCAGGACATCCTGCGGAGGAAGAAGCTTTTGAATTTGGCCGAAGCACAGACCGAGGAACTGGCTGCACTGAGAGCTGAGGTGGAACGCCTGCGGAGAAAGACATTCCCTGCTCTTACTCCACTTAAACCCAACTGATAGTTTAAATGTAGTTACCAAAAGTGTAAAAGAGTAGAATAATGTTCCAATGTGTTTGttcatttgaagaaaaaaaaaaaacaataggctAAAACCACAATTAGGGATTTGTTGGAGTTACTTTATACCAGACATGTTTCAAAAGCTCTACATGATGTTCTCTATGTGATGACCTTAAACCCTCAAATGTGTATCCAAACAGTGagacaaatattaaataaataaaatattaattaaatgtttaaattttaattttaattcattttagcaGAGGAGcatatcaataaataaataactggca

Function

GO: NA

KEGG:

id description
K24223 CFAP43, WDR96; cilia- and flagella-associated protein 43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291957 lncRNA upstream 149810 9481672 ~ 9482581 (+) True G215103
TU291955 lncRNA upstream 150853 9481315 ~ 9481538 (+) True G215102
TU291947 lncRNA upstream 163992 9466620 ~ 9468399 (+) True G215094
TU291871 lncRNA upstream 322218 9288076 ~ 9310173 (+) True G215039
TU291829 lncRNA upstream 562524 9068995 ~ 9069867 (+) True G215011
TU292091 lncRNA downstream 41065 9694917 ~ 9695273 (+) True G215197
TU292094 lncRNA downstream 106436 9760288 ~ 9762248 (+) True G215199
TU292118 lncRNA downstream 133300 9787152 ~ 9788616 (+) True G215215
TU292133 lncRNA downstream 165412 9819264 ~ 9890322 (+) True G215224
TU292146 lncRNA downstream 236970 9890822 ~ 9891888 (+) True G215236
XM_007240835.3 mRNA upstream 17749 9565948 ~ 9614642 (+) True tspan15
XM_007240834.3 mRNA upstream 89420 9524819 ~ 9542971 (+) True hk1
XM_007256103.3 mRNA upstream 116452 9496834 ~ 9515939 (+) True LOC103047009
XM_007256102.3 mRNA upstream 137862 9483598 ~ 9494529 (+) True supv3l1
XM_007256101.3 mRNA upstream 151846 9469084 ~ 9480545 (+) True vps26a
XM_022684426.1 mRNA downstream 6648 9660500 ~ 9679057 (+) True rufy2
XM_022684570.1 mRNA downstream 42175 9696027 ~ 9759882 (+) True LOC103028294
XM_022684569.1 mRNA downstream 51488 9705340 ~ 9759882 (+) False LOC103028294
XM_022684572.1 mRNA downstream 51488 9705340 ~ 9759882 (+) False LOC103028294
XM_022684571.1 mRNA downstream 51488 9705340 ~ 9759882 (+) False LOC103028294
TU291737 other upstream 670621 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 1521066 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 1755273 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 1819359 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 3150762 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 921643 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 1293227 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 1473314 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 1475518 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2551649 12205501 ~ 12206164 (+) True G215834

Expression Profile