RNA id: XM_022684569.1


Basic Information

Item Value
RNA id XM_022684569.1
length 6457
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC103028294
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9696027 ~ 9759882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGCAGGAGCTGCTGTTCGTCTGAGAAGAGAGCGGCTCAGAGGAGGGAAGTACAGAGGCACAGACATGCTGCGTGTGGAAGACTGAAGGAAGGATTAGATGAGTCCCTTCTTCAACACTCCTGAGAGGATAGCAGGAGAATGAGGAGCAGATGAAGGCCAGGAGGTGGTTTTGAAGAAGATTTGGAGATAGTTCTGCAGTACGTTCCCCTCTGTGGACACGTAAATCATTCCAAAGGAAACATGACGCCATGTATATCTACTGAGATAGACACAGCACAGTAGGGTGTCCCCAAAGAGATTAGcacactgtgttctctgaacTTGCCTGCTAGGGATCATGGCTCAGTCTGGTAAAGTCCTGCACCTGTATGTGGAGGTGAGATCAGTGTCTGACGAGGAGGGGAAAGAACTGGAAAATACAGAAGGGACAAAGTCTCTAATGTTACAAGGGCCAGACCTCCTTCCACAGTCACACTGTAGAGCCCCACATGGCCTAGTGCCCCCAGCTGGAGTTCCACATAAAGGGGCCAGCAGCACCCAAAGCCTTGCTTCCAATAAATCTCCATCCAGACACTCTGTCAGCTTTCAGCTGCATCCAGGGGAGGAGCCGGCGCACCCACCCAATCATACTCATCGACAGAGTTTGCCGTACGACGAGTTAAGTAAGCTATTGTCTGCCCTCCAACCAGGACCTAATGGAAGTACCTGTACCCTGGTGCGAACTCGCTCATCTGAGAGTGAGCCATTCTATGGGAGGGTTTCTAGATTTTCTGGACATTTTACTGCCCCTCCTACACCTAGTGGTGTACGAAGGGCCTATGGGAGGGAAGATCAAGGCAAACGGTCAGTTGTGACCTACAGTTATATTGAGAAAGCTAACATCAAGTCTGTAGAAGGTCATCATTCCCCTTTGTGCCAAAATGAGCCAGAGAACCCATTTAGAAGAGGAATGGATGACCAGGACATTCCCTTCCATCTAAGGAAGAGACTTAGTGACCCAGCGTGGTTCAATGGCTTTGAGTCCACTGGAAACTCAAATCATGCCTTACCAGGCCTAGCGGGCACACCAAAAGGAACCCCCAGCCTTCGCAGAGCTACCCTAGACTCAATCGCAAAGGAGGCCACTCTTCGTGCCCTGGAGGAGTTTGGTTCCCCACAAATCAAACGCAAACTGGCTGCcaaaaatcctgaaggagatcATGAGTCCGTACTCAAAGATCAGCCTCGATGTCGATCATGGTCTGGGTCTCCATTGGTGCCTAGGAGTGCCAGAACTCTGCCTGCAAATGCACAGGTACTAACTCCAGATCAAAACAGGACTTTGCATAGCATCCCTAGAAGCCCAGCAACTGACCGTCTCTCTACTCATGCGAGACAGTCCTACTACACCATGTCACCCCCTATGAATGTGCGATCCCAGGAaataccaaaccaaaccagagtcTGGAAGGGTGAGGAGAATCTGAAGAAAGGGTTCAGACATGGCCCTCCATTGCCTTCTTGCAAGCCCACAGCTATTCAACATGAAATTCCGTCTATGAGCATCACTCAGGCACCATGTGAGCAGATGCACAACAGAAGTGAAAGCCCCAGGCAACCACACAAGGTCAATTTCAACCTTTCCAGCTCATCAAATCAATCGGATGTTAATAAAATCAGTGGTAAGAACAGTGCCTCACCTGCCACAAGCCCTGAACTAGCTCGTAAGTTAGCAGAAGAAGCCTCAAAGCTGTCCGTACTTATGGAGGCAAGGAGGTCTCCTTCCCCAACTCCGTCGTTATCAGATACCATGAGGTCAGACAGTCCTAGATCAGGGGCCAACTCCAGAGAATCACAACATCCGTATGCCAGCTTTGAAGGGTCTACAACAAAAAGTGCTTTGGATGGTAATCTTTCTTCCCAGGATCATCACTGGGATGAGGACCTTGTTCAAACAGGCCTACGTTCAGGTCAGGCCTCTCCTCTTATATCTCACAGAGGACTCACATCTCCTGCACTTCCTTCTAGGCTGCATCGTGTCTCCACATCCCCCATTCGAGACCCAAAACAAGAAGCTGCAGAGATGCCAAGAAATTATAGTCCAGTTTTGTATAGACACCGGCTTCCTCAATATACAGGAGACATTGGTTTAACCAGGCTTGAGTGTAGACATTACGATGCACGGTATGATTCTGGTCTCAGAGACAGTCCAGACAGCAACAGAAGACACTGCACAGGACCTGTGACCAATAGTAGCTCAGTAAATTGGAcctcccagcagcagcagcaccactggAGAGAGCATTCCTCCATTCCTGGTGTAATGGAATACTCCAACAAGGAGAATGGCACTGAAGTTCCACTAGGGACATCTTTCAGGGAGTTGAGCAAACAGATCAAAAATGGTCCAGCTGTGATGCTGGCCTCTCAGGAGAGCAGTTATAGGACGCCGGTACATCGAGAGATGAGAGGTGAGAGCCGGACAGATGTGGAGCAGGGCAGCACTTTGTCCAATTCATCCAGTGGAGTTACAGGCAGTCTGAGACAGGGCACGGCACTTGAGAGTGACTCCATTTCCCCAGAGACGTCCAGCCAAACGAGTCGAAGAAGCAGTGAGACCGGGAACACGGGTCTACAGTCTGACAGTGGATCGTCACTTTTGGGCCCTTCTTTGCACTCTCAAAAAATTGCTCGTGCCAAATGGGAGTTTCTATTCGGGAAGCCTTCAGAAGAGCACCATGGAGTAAAAGCAGGTCCAGGATCTGCACCCTCTAGTGGCTACTCCAGCGATTCTCTTACACCAGCTCCACCATCGTCATTGCCTCTGAAGTCCATGGCAGCTCATTCCAGACACAGGCCAGGATCCGAGACTCAGAAGGCCACCAGCCACGATGTTCAGCAGGTGGACGTTGAGCTGCTCAACCCCCCTCCTTCCTCAGGCTCTTCTCCAAAGACTGGCATCATCAAGCGTACCATCAAATACTCAGAGACAGATCTGGACGCTGTACCCATGCGCTGCTACAGAGAGACTGACATTGATGAGGTGATCCTGGCCGAGCAGGAGGAAGTGGACTCTGCTTTCGGAAGTGACCGCAGTGTGCTGGGCacctccggcaccagcagtggGAGTCCTATGGAGGGGACGCTAAGCTTGCAGGCGAatggggaggaggaggatgagcaGTTGCAGGATGAAGAGGTGGTTAGCTGGGCCAGCGTGAGGATGCAGGGTGACAGGAAGAGGCAGCACGCTTCACAAGACGCAGATGAAGTATTCAGCCGTTTACTTAAAGGCTCCCCAAACTGCTTGTCGGACAGCCACACTGCTCTGAAGTCCCCCATCACTGTTGAAAGTCCTCGCAGGACCTCCATGGATGGCCAGGACTCTTTTAGTCGTCACTTTGAGAGCATCATGGAATCACACCGGGCCAAGGGCACCTCCTACAGCAGCCTGGACAGTATGGACATCACCCCCAGTGGCCCGCCCGTCTTCACCTTTGACTTCCCGACCCTGACCCCTGAGATCCAGAGTCAGATATGTGAGAGCGCCCAGCAGATCATTGAACTGAGCTTTGCTCCGCTGGCCCAGTACGAAGAACCCAGCCTTTTGGGTCCTAGTGCCTCCGAGATGTTTCATGGACAGTCTGAGACAACCCAGAGCAGCATTTCTGAGGAGGACAGCGAGTCGAGCAGCACCGATCACTTTGAGAAGCACATTCTACCTGAGACTGACACGGACACGACTGCAGAAAGTGAGCGGCCATTTGGTCCAGTCTCGCAGTCTGACCAAGAGGTGGCTGAGCGCTTGGCTCTGGGAACTGGTGACCTTGCCAATGGCAACAAGGCTGATCTGCAGGCTGCCAAACGGCTGGCCAAGCGCCTCTACAACCTGGATGGCTTCAGGAGGTCCGACGTGGCTCGACACCTCAGCAAAAATAATGAGTTCAGCAGGATGGTGGCGGAGGAGTATTTGAGTTACTTCAACTTCTCTGGGCTGACTGTGGATCAGGCACTGAGAGTTTTCCTGAGAGAGTTTGCGCTGATGGGAGAGACGCAGGAGAGAGAACGAGTGCTGTCACACTTCTCCAGAAGATACATGCAGTGCAACCCCAACGCTGTACCCAGTGAAGacaGCGTTCACACTCTGACCTGCGCTCTGATGCTGCTGAACACAGATCTTCACGGCCATAATGTGGGGAAGAGGATGTCCTGTACGCAGTTCATAGGCAATCTGGAGGGGCTGAACGATGGCCAGGACTTCCCCAAGGATCTTCTCAAGgCACTCTACAACTCCATCAAGAATGAGAAACTACAGTGGACGATTGATGAAGAGGAGCTGCGTAAGTCTTTCTCAGAGCTGGTGGATGGCAGGATGGACTCTGCCTCTCACACTATGAAGAGGATCAGCAGTGGGGGAAACCCTCTAGTGAGTCTGGCTCAGCAGTCCAGCGCTCAGGTCTATAAGAACGGCTTCCTCGTGCGCAAAGTCCACGCCGACCCCGACGGCAAGAGAACTCCTCGAGGTAAGAGAGGGTGGAAGTCCTTTTATGCCATCTTAAAAGGACTGGTTCTCTACCTACAGAAGGGTGAATATCATGCAGATAAGCAGCTGTCTGATGAGGATCTGAAGAACGCTATATCTATCCATCACTCTCTGGCCATGAGAGCATCAGACTACAGCAAGAGGCCCAATGTTTTTTACCTGCGAACAGCTGACTGGAGAGTCTTCCTCTTCCAGGCCCCtaATGCTGAGCAGATGCAGTCGTGGATCACCCGCATCAACACTGTGGCAGCCATGTTCTCCGCCCCTCCCTTCCCTGCGGCCATCGGCTCCCAGAAGAGGTTCAGCCGGCCTCTGCTGCCGGGCTCCAACACCAAGCTCTCCCAGGTACCCAACAGCCCCCTCTCCCTCATCCAGGAGGAGCAGCTGCAAGCTCATGAAACGCGCTTCAGAGCCATGTCtgcagagctgcaggagctgcggTCTGTTCCTCAGGACCGCAGGACTAAAGGGAAAGATCAGGACGAGGGCaagcagagggaggagttcctGGATTTCGAGAAAACACGCTATGGAACGTACGCCATGCTGCTGAGAGCCAAGATCCGTATTGGCGAGTCGGACCTGGCTGCATTCGAGTCTCGTCTGTTTGCGGATGGGGGTCTGCAGAGGGCCCACTCCAGCCCCACGCTGCCTCAGGACAGCAGCCATGCCAGCAGCAGTGGGGGTGGTGGAGGTGGCAGTAGTGGCGGCGGGGGTGGTGGCAGCAACGGTGGCAGTAGCAGTGGCGGAGGTGGTGGTGGCAGCAAGAAGAGCAAGCGCAATGAAGGCCAGCGACAAAGCTACAGACAAGCAGTGAAACAGTGAGCCCGGTGCTCGGTAGATCAGGTGAGTGTGGAGCACAGAGATGAGGAAAAGATGGTAGTTTGTGTTACACTGCAGTTGCCTCTCTCTCCTTCCGTCCGCCCTGTCAGCTCCTCCTGACTGCAGGGCTGGGCTGGCGCTAAAGGATGCGGTTGCTGTTGAAGGGCTAAAGATCAGTGCTGTTTCTTTCCGTTGGTGGAAGCTGGCAGAAGCAGGTTTTCTGGCCCCAGGTCTTCAGAGGGCAGTGGGGTGAGACCAGAGCCAGCCTCTGTGTTTTTAGTCCTTTTAGGTCAGCTTTACGCCTCTCTCAGTTTGACACGTATGCTGTATTTTTGGCATGGACTGCTTAAATCTTTGTATGCATAtttcttttgctgtttttttttgttgtttcgtGTTTAAACACGATGCCTCTACAAGCCAAGTACAAGACTGTCCGACAAgatacacagaaaaataagagtctATTTTTGAATCCTATTTGGCACTATATGGACTTTCCTTTGATCTTAAACTTTTGGAGACAATTTCTGTCTAACTGGATTACCTTCTGCACACCTGCACTAGCGCAATCGCTTGATCTGGAGATTtcctttctttcatttcttcgCTTTCTACACGTTTAAAAAAAACCTAccattcctttctttcttcttacTTCAACACTTCTTTGGGAGTTGTAAAATTTGGAAAATTAACCTGTATAGTCCTTGAAAGCCTTTGAACTCAAGTTTCGAAGCATGCTTGTGGTGTAAAGACAATCGATTCCCTCGTAATTTCCTCGTATTACAACTCCCATTATCTGTActgtgtatgtttgttttttgtatgtttgtttgctttAACCATAAAACTGTACAGTCAGGCTGACTTTTGCTGTAAGTGCACTAGAGCTGGCAGCATTTCAGAGTTTATCCATAAGTAGGCCTTAAGTaggtctgtcacgataattTTGTTATTAACATATCCAACTCTACATTCTTAGTGAGGAGAACTCATATGTCATATGTCCGCTAAAAAACAACAGTCTTATTTTACTTGTGTTTTTCACTGATTTGGGTTATGTAGCAAATTCTTTTGTCTGAatattccaaataataaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292091 lncRNA upstream 10067 9694917 ~ 9695273 (+) True G215197
TU291957 lncRNA upstream 222759 9481672 ~ 9482581 (+) True G215103
TU291955 lncRNA upstream 223802 9481315 ~ 9481538 (+) True G215102
TU291947 lncRNA upstream 236941 9466620 ~ 9468399 (+) True G215094
TU291871 lncRNA upstream 395167 9288076 ~ 9310173 (+) True G215039
TU292094 lncRNA downstream 406 9760288 ~ 9762248 (+) True G215199
TU292118 lncRNA downstream 27270 9787152 ~ 9788616 (+) True G215215
TU292133 lncRNA downstream 59382 9819264 ~ 9890322 (+) True G215224
TU292146 lncRNA downstream 130940 9890822 ~ 9891888 (+) True G215236
TU292156 lncRNA downstream 155505 9915387 ~ 9915917 (+) True G215245
XM_022684426.1 mRNA upstream 26283 9660500 ~ 9679057 (+) True rufy2
XM_022684567.1 mRNA upstream 51488 9632391 ~ 9653852 (+) True cfap43
XM_022684568.1 mRNA upstream 51488 9632391 ~ 9653852 (+) False cfap43
XM_007240835.3 mRNA upstream 90698 9565948 ~ 9614642 (+) True tspan15
XM_007240834.3 mRNA upstream 162369 9524819 ~ 9542971 (+) True hk1
XM_007258762.3 mRNA downstream 40814 9800696 ~ 9817693 (+) True glud1
XM_007258759.3 mRNA downstream 97494 9857376 ~ 9886745 (+) True mmrn2
XM_007258713.3 mRNA downstream 769747 10529629 ~ 10555221 (+) True LOC103041708
XM_007258712.3 mRNA downstream 802532 10562414 ~ 10572740 (+) True LOC103041404
XM_015608228.2 mRNA downstream 819710 10579592 ~ 10579981 (+) False sprn
TU291737 other upstream 743570 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 1594015 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 1828222 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 1892308 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 3223711 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 815613 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 1187197 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 1367284 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 1369488 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2445619 12205501 ~ 12206164 (+) True G215834

Expression Profile