RNA id: XM_022684691.1


Basic Information

Item Value
RNA id XM_022684691.1
length 1637
RNA type mRNA
GC content 0.51
exon number 5
gene id mb21d1
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16110265 ~ 16116490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGAAAGCCCAGGCTGGGTTAGCCTCTTCTGACGTCAAGAAGCTTTATAAGCGCTCGGCGGGAGAACCAAGGTCCTTTTACGCACAATGAGTGGAAGAAGCAGACCAAAGAGCACAGAGGAGACTCCAGGCAAGACTCGGGGAGCCACAGGTCCGGGGTCCACTCGGAGGAAACCCTCTGGGAAGGGCGAGGAGAAGAGAGATGGAAGCTCAAAAGCTGCAGCACCACCAATGGATAGGGATAAGGACAGGGACAGGGCAGGAGGCAGAGGGGGACGCACCGCGACGGTTCCCCGGGGCGCGCCCAGCCCCACTCCCGCCAAAACTCCGCTCAACAGCAAGCCTCCCCCAGCAGCCGCCCCGCGAACAGCAGCGAGAGGTGCAGAAGACAAGAATACTCCCAGAAACCCACCCAGCAGTACCACCAGCATCGACTACAACCCGGACAGGGTCCTCCGAGACACTCTCGAAAAGTTAAAAATCAAGAAAACCGAGAGAAACGAGGCAACGAGGTGCGTAAACGAGATCCAGAAGGAAATCGCCAAACACCTGAAAGAGAGTTTAGACTGGTGCAAAGAAATCCAGGAGCTCAAGACCGGGAGCCACGTCGAAAACGTTAAAATCTGCGAGTCTGATGAGTTCGATGTAATGCTGGTCATTTCTGTGGACAGAGTGGACATCCAACCTTTTAGAGGGGACGGTGCCTTCTACAGTGTGGCACTGAAGCGCAACTCGTGTAAATCTTTGGACAAATTTCTCAACAAAGACAAAATCATCGAGGCCAGTGAAATGCTCACAGAGTTCCGGAAGAAAGTGAAGGAATGTGTGCCCAAGCTGACTTCCAAATataACATTACAGTGGAGGGTAAAAAGCCAGGCTGTCCCGCTGTGACCCTGCAGGTGAAGGGAAAGGACGGCAGGATCATCTCTTTGGACTTTGTGCTGGGGCTGGAGGTGCACAGCTCAAGCTGGCCAGCCATCACAAAGGATGGGTTCAAGATCGACAACTGGCttggcaaaaaagtaaaaacagatCTAAAGCGCAAGCCCTTTTATTTGGTGCCCAAATATGAGGGCAAAGGAACCACAGAGTGCGATGGTGTTAAAGCTAAAGACGCATGGCGCATCTCCTTTTCACATGTGGAGAAAGAAGTCCTGAAAAACCACGGCCAGTCCAAGACCTGCTGCGAGGGCCGGCCCAGTTGCTGCAGGAAGCAGTGTCTGAAGCTTCTGAAGTATCTGGTGCGGGGGCTGAAGGAGCATCACCCAAAGGAGGCAGGCAAACTATGCTCCTACCATGCCAAGACCACACTGCTCCATGCCTGCGCAGAACGGGGGGGAGATAGCGAGTGGGAAATCAGTCAGCTCAGTCACTGCTTCCAGCAGGTCCTCTCTGACTTTGaaaattatttaagaaaacagGATTTGCCCAACTTCTTTATCCCCTCACATAATCTACTGAAGTCAGCAGGCCTGGACAAGAAAACCTGTAACTTCCTGGCAGACGAAATCGAGTTCCAGCGAAACAATTGTTTTCCTGTGTTCCGCTGAGCTGTTTTGTTACTATTTGTTTGTAAAACACTTATTAGaaattttgcatgtttttgcatttatttaaaataaaatattcaaacttg

Function

GO: NA

KEGG:

id description
K17834 MB21D1; cyclic GMP-AMP synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294240 lncRNA upstream 824 16108729 ~ 16109441 (+) True G216893
TU294169 lncRNA upstream 186954 15914931 ~ 15923311 (+) True G216831
TU294127 lncRNA upstream 440529 15669518 ~ 15669736 (+) True G216793
XR_002651915.1 lncRNA upstream 1186987 14911999 ~ 14923278 (+) True LOC111195977
XR_002651914.1 lncRNA upstream 1198278 14892201 ~ 14911987 (+) True LOC111195976
TU294241 lncRNA downstream 1369 16117859 ~ 16128583 (+) True G216894
TU294242 lncRNA downstream 1369 16117859 ~ 16125941 (+) False G216894
TU294263 lncRNA downstream 138998 16255488 ~ 16323301 (+) True G216910
XR_001518681.2 lncRNA downstream 338847 16455337 ~ 16469869 (+) True LOC103031925
TU294307 lncRNA downstream 338892 16455382 ~ 16469428 (+) False LOC103031925
XM_022684689.1 mRNA upstream 1699 16103228 ~ 16108566 (+) True LOC103021740
XM_007252223.3 mRNA upstream 8346 16089846 ~ 16101919 (+) True LOC103022067
XM_007252224.3 mRNA upstream 23301 16024820 ~ 16086964 (+) True rin2
XM_022684688.1 mRNA upstream 23301 16043971 ~ 16086964 (+) False rin2
XM_007252226.3 mRNA upstream 87426 16017400 ~ 16022839 (+) True LOC103022884
XM_007249442.3 mRNA downstream 323107 16439597 ~ 16452704 (+) True LOC103032358
XM_007249445.3 mRNA downstream 407627 16524117 ~ 16551646 (+) True b3gat2
XM_007249450.3 mRNA downstream 736214 16852704 ~ 16879760 (+) True LOC103035008
XM_022684400.1 mRNA downstream 800211 16916701 ~ 16922940 (+) True fgf8_1
NM_001291263.1 mRNA downstream 800294 16916784 ~ 16922940 (+) False fgf8_1
trnat-ugu_90 other upstream 2762632 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 2794103 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 2795065 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 3006223 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 3394360 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 888105 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 1050528 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 2195416 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 2626743 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 2720872 18837362 ~ 18847028 (+) False cxcl12

Expression Profile