RNA id: XM_022684720.1


Basic Information

Item Value
RNA id XM_022684720.1
length 3621
RNA type mRNA
GC content 0.39
exon number 11
gene id ldb1
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17077039 ~ 17107707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatgccactcttggtgcaaaaattcaagcagttcaagcaGTATGGGTGAGAAGATGTCTGTTGGAGGTTGCGCTTGCCCAGGCTGTTCGTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCTCCCAACGGTAGTGCCTTTCCCCCTTTTCATCCTGGCACAATGCTGGACAGAGATGTGGGACCAACACCAATGTATCCCCCCTCGTACATGGAACCTGGGATAGGAAGGCACACGCCGTATGGAAATCAAACAGACTACAGGATATTTGAACTCAATAAACGGCTACAGAACTGGACAGAGcagGACTGTGACAATCTGTGGTGGGATGCTTTCACAACAGAGTTTTTTGAAGATGATGCAATGTTGACTATCACATTTTGTTTGGAAGATGGACCTAAAAGATATACAATTGGCCGGACGTTAATTCCTCGCTACTTCAGAAGCATCTTTGAGGGAGGAGCCACTGAACTCTTTTATGTACTGAAGCATCCCAAGGAGTCCTTCCACAGCAACTTTGTATCTCTCGACTGTGATCAGTGCACCATGGTCACGCAGAACGGCAAGCCCATGTTTACACAGGTTTGTGTAGAAGGAAGGTTGTATTTGGAGTTCATGTTTGACGATATGATGCGCATAAAGACGTGGCACTTCAGCATCCGACAACACCGAGAAGTCGTACCACGCAGCATACTGGCCATGCACGCCCAGGACCCTCAGATGCTTGACCAGCTTTCAAAAAACATTACAAGATGTGGATTATCTAATTCAACTTTAAACTACCTCCGACTTTGTGTAATCCTGGAGCCCATGCAGGAGCTAATGTCCAGACACAAGACGTATAGCCTCAGTCCCCGAGATTGCTTAAAGACCTGTTTATTTCAGAAATGGCAAAGAATGGTTGCCCCACCAGCTGAGCCAGCAAGACAAGCACCAAACAAGCGGCGGAAAAGAAAGATGTCGGGTGGCAGCACAGTGAGTGCAGGTGGTGGcaccaacaacaacagcaacagcaaGAAGAAAAGTCCAGCCAGCAGCTTTGCGCTCTCCAGCCAGGATGTGATGGTGGTGGGCGAGCCCACTCTGATGGGAGGGGAGTTCGGGGACGAGGATGAGCGACTGATCACACGGCTCGAGAACACACAGTTTGATGCAGCCAATGGCATCGATGACGAGGACAGTTTCACCAACTCTCCAGCCCTGGGCAACAACAGCCCCTGGAACAACAAAGCTCCCTCCAGCCAGGAGAGCAAGAGCGACAACCCCACCTCACAGTCAGCTCAGTAGACCACAGCCCTCACTGTGGAGGGTTAGGGAAAGGCATGCAGTAAATAGAGGACATTTTTAAATTTCCGTCGTTTGATTGAAATGGCACTCGCGTTTTAGTTCTTAGAACCGGCCTCCCTACCATAGTGCTTTGCTCTGAAGAATCCCAACTGGCCAGACTCTGTTCTTCTTTAGCTTGTGAAATTGTGCTTTTTGCAAATTACTGTAGAATTAATCATCTGCATTTGATATTtgaattattcttttatttctctgaaATGATCTCACTGTGCATTTgtgcctgagagagagagagaatctagTTTTAGCCCTAGAAAAGAATCAGTGTCTGGTCTGTTTGAGTTCTCTGAGCTTGAGAACAGCAGAGTTAGTGAAGGCAGCCATGTCTGTGGGTTCTTGTTCCAACCTCGGGTCTCTGGGTGCTGTGCTTGACAATGCATGGCGGTTTCTGTTGTGCTCACTTCACAGAAAAGGGtcttttgaaaattatttttgaatattattttgttttcttatttaagCATCTGATGATAAACATTATGCGCACCTCAGATTCAAAACCAGCTCCTTCTTATTTGATTTCACTTTATTtcaaacaagaaagaaaaacctgaattatttgttttgtagGACCTGGTTGGAACAAAAACCTGTACAGTTCCGGAGCTTGAGGACCGGAGTTGAGAACCACTAcgtcttttaaaaataaataaataagtgtaaaTCTTGATGGTACTGGAGTACTGGTCATGCTCAGTATGGTCATATGCAGAAGTTGCCTACCATGAACCCAGGCTCAAAAGAggagttttattgatttttttttgttttgttttttttacatttgttttttttgtttcatttttatatatcaaTTTGTAAAGGTAAAATTATAAGCAAGTTAAAACACCCTGACTATCCTTTGCACTGTTGTCACTGTATTCTCAATCTATTTTTCTTACAAAATTCTAgtacattttcttctttttatccttccctgtttaaaaaaaaaaaatgttgaatttgACTAAAGCTGTAACTGGAGAATGGtagagatttatatatatatatatatatatatatataatgctttttattatttttattattattattatgctttacACATTTGAGATAGGCAAGTTGACTTCCTTTTAAATGTGTGCTAAAGTTAGTTTTATCACAGCATGTGTGTCTGGAAACTGCATGTTTCAGACATCTATTcccactgtactgtactctataTGTCAGTGCCCATATTCTTTCTAGGAACTATTAAGTTGATGTCTGTGACAGATTTTTAGTTTTGTCAAGGAAGCTCAAAACCTTCAGAAAATGGAAATAATGCTGACCAAATGTTCTCAAATTGCAAAGCATAATGCCTCATTCCCATTAGTAAATACTCACcatgtaattattttagtttcccaatatttttggattttttttttaaatgctacaGACCAAGAAGCTATGAGCAAGATACTTTAATCTCAGCCCTTGTGTATTTGTTTCTATGAAGAAttcttttcatattttgtttGTGTAATTGTGCTGTATATTTAAGACTGTAGCTATGTTCTGTATAAGTGTAATTGTATTTACTCTTCTTTAGAGCATCCCTGCGGGCGTGCGGTTTAATGTAAAAACGAAAACCTAATCATGCAttgtagaaaatgtttttagatgCATTAACCATAGTCACGTCAGCTTGTAGATCATAGTTTTATTTcaatgtataatgtatttattatttttttttatcttgccaCTTCATAATGTCTGGATACAATACATAGTCTTATGTAAAAAACTTCAATCTTTGGACAAATTCTCAATAGAAAATTTCTATGCTGCCTTTGTCCTTTTTTCCTGTATAacataattacactttaattTCATGTGTGACATGTAAGACTATGAAATCATCAATGTTGTTGGTTTGACATTGTTGCACTGAATTTAAAGTCAATCCTTTTCGGTTTAAAACAAATCCCTTGACATAAGCCATACTAGGTCTTAACACCAGGTGGCATTCTGCATTGTGGCCTCATTTGTAATGggggaaaggaaaaaataattcACTTCTTATCAATTCAGCCAAGTATTCTGCCCAATTGTGTGGctattttatatgaaaaataaatacattgttcAGCTGACTCAGACAGTCCAGTGTTTGTTTGGGATTATTCACCAAATCAAAGGGGAAGCTCCTTTGTGTTCTTGTAGAGCCCCTTTGATAGTGGCTGTTtgataagtatatttttttctagtgtCTGCAATGATGATTCATGTAtggtattaataaaaaaatgaattttcacttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294516 lncRNA upstream 16458 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 67241 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 178645 16883041 ~ 16898394 (+) True LOC111196035
TU294461 lncRNA upstream 181288 16883025 ~ 16895751 (+) False LOC111196035
TU294303 lncRNA upstream 357558 16560852 ~ 16719481 (+) False G216941
TU294550 lncRNA downstream 156423 17264130 ~ 17264431 (+) True G217140
TU294658 lncRNA downstream 287332 17395039 ~ 17395249 (+) True G217222
TU294793 lncRNA downstream 669059 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 922919 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 992247 18099954 ~ 18161772 (+) True G217359
XM_007249462.3 mRNA upstream 9398 17063896 ~ 17067641 (+) True polr1c
XM_007249460.3 mRNA upstream 20994 17051980 ~ 17056045 (+) True LOC103037825
XM_022684718.1 mRNA upstream 48038 17010555 ~ 17029001 (+) False cnnm2
XM_007249457.3 mRNA upstream 48038 17010556 ~ 17029001 (+) True cnnm2
XM_007249456.3 mRNA upstream 69593 17004541 ~ 17007446 (+) False borcs7
XM_007249469.3 mRNA downstream 1556 17109263 ~ 17130106 (+) True LOC103040130
XM_007249475.3 mRNA downstream 32964 17140671 ~ 17145888 (+) False nsmce4a
XM_007249474.2 mRNA downstream 32967 17140674 ~ 17145888 (+) True nsmce4a
XM_022684740.1 mRNA downstream 41635 17149342 ~ 17184251 (+) True LOC111195981
XM_022684738.1 mRNA downstream 79434 17187141 ~ 17261572 (+) False LOC103040431
TU294489 other upstream 69502 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 3729406 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 3760877 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 3761839 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 3972997 13091746 ~ 13104042 (+) True G216053
XR_002651919.1 other downstream 59311 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 1204199 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1635526 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1729655 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 2060156 19167863 ~ 19203516 (+) False LOC103040131

Expression Profile