RNA id: XM_022684740.1


Basic Information

Item Value
RNA id XM_022684740.1
length 2589
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC111195981
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17149342 ~ 17184251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCACATCACATCTGCAGAGGTTCTGCTGCAGTCTTgcagtataaaaaaatgtgtgagaaattcctttttttctgcCCCATTTCAGATGAGTGcttctttctgtgtttattttatttattaatttatttttttagaccttTTCACTTGGGACTCAGCACAGTGTTATCCAGCCTGCGGCTGTGGCCCCTTTAAAACCGCAGATGTTTTCTTGCTCTCTGTCCTTTCAACTCTTCTagtctagctctctctctctttcctctctctctctctgtgcgtcTCTCAATGTTGTACCCCCTCCTTTTCCTGTTCATGTATGTTAAGTGTTTCTATGGGAAACAGAGGGGCTTTTCTACCCATGTGCAGCGTCTATAGGCTcggaaaatggatggatggagggaaggAGAGCACGACCCACCTTTCACTTTGGTTTCTTCAACTGTTCTATTTATAACACAGCATTCTTATATAATATGGCATGGAGATGTATGTCATAGATGTACCCTGGGCACTGCTGTAGATGAGGCTTATTAGTCACACATTGCCTTGCAGACTtgtacactcactcacacactcactcactcactatctccctcacacacatacacacacacacttgcactcaCTTGCTCACATGCATCCTAGCCAGCTCTGCGATGCCATATCTGTGTAGTAGTGGCGATGCAGTTCTGCAGGCAGTATCTCTGCAAGCCTTGTAGTGCTGCTGTTACGTCTCCTCAGGAGGACATGGAATACAGGATGGGGAGCTGCATAGGAGTCGTACGGAACCAGGAGGGCGCCACGGACAGTGTAGTGATCTTTCCTCCTCAGGAAACACAGTCTGGATCAGCATTTGAGGCTGATATTCACGCAGAGAGAGTTGCTCCGACGAGGGATAAACCCAACAGTGCAGAGAACGGATTACTTCAAACTGAAGCTCAGCCCAGCCGCAGTACTGCAGAAGAGGCACAGAGCCTTGCTCACGAGGAGCAGAACCAGGGAGAACAGGAAGACGAGCTTGAGTTTCCGCATGACCTTCTACCGTGTATAGATCTAAGCACTGAGCTCAACCTCACCTGGGGAGCTTCACTCGGCAGTAAACAGGTGGAATCAGATGAGAAGAAGAATGAGCCAGTGTCACTAAGTGAGCAAGTTAACCCCCTGCTGGTTGGACTGCAACATTACATGGAGTCCAGTTCACCAGTAGTGGGCCTCATAGAGAGCCATGATGGAGGCTCATCTCCACCACAGCCGCAGTCAGACAGAGTGATTCAAGAACCATCAGTCATGTCATCACACCAGATTTCAGCCGCTCTTCTGGACCTCGAACTCGAAGAAGCCTTTAAAACATGCGAGGAACAAATGGCCTCTTTTGACGTAACCTCTGACTTGATCACTTCCAACACCACAGATCAGACTGACACATGTCTGTCAGTGCCTCTGCCTGACTCTGAAGATGAGGATGAGCACACAGCTGTCAATGAGTGTCATGTGTCGTCGCCACTGCCGCTTCCTGAATCTCAAACAGGATGTGACATGAACAGGCATGGAAATACTGGAGTGCAAACAAATCATGCAGTAGGTTGCAGAGAGGAGGTTGTGTTCAGCTTCAAAGACTATATACTTGGGAATGCACAGGCAGAGACCGTCAGTGTGAAAACTACTAATAAAAGTATGGAAGTGTTAGGAAATAACATGGAAAGTACTCCTAATATGGAACATATAAAAGACAGTAATGATGAGTCAAAGTCTGACAAAATTGAAATGAGACaggaagaaataatgaaaaagatctCAGTCACTGAGGCAAATGTCCAGGTTCAATCAAAggacacacatacagtactagAAGCTACAGAAGGTGTCACCTTGCAAGTTAACCAAGACTCCCCTAAGAAAGTGACACATGAGGAAATAAGAGGCATTAAAAGAACTGGTTCACAGGGCACAGAAACAGAGACAATCAGTGTGGAAGCTACTGAAAATCTGAAAGTATTAAGGGATGAACATATGAACGAGACTgagaaagaaacaaaggctGATGAAAATGGAAAGAGACCAGAAGAAATCATGAAAAATAGCTCAATTTCTGAAGCAACGATTGAGGTTCaatcaaaagaaacaaataaagcaCTGAAAGCAACAGTATCCAAGCTACATAACCAAGAAATACCTGATGATGAGGTTCAACCAAAGACAACAACTGAAGCATTGGAAGCACTGGAAGGTTTCACTTTGCTTGATAACCAAGGCTTACCTAAGGAGGTGTGTACAAATATAGCATGTACACAGCAGGATACAGGAGACATTCAAAGAACTGGCTCGCAGGAAGATTCACAAGTTAGTTTtgccaaaaacacagaaacaaaggcAATCAGTGTGGAAGCAACTAATGAAAATATGAAAGTATTAAGAAACAGTGTGGAAGGCAAGCTAAAGACAGAACATACAAAATATAATGATAAAGAATCAAAGACTgaagaaactgaaaaaatacaaGAAGAAATACTGAAAAATAGCTCAGTCACTGACCCAAACACTGAGGTTCAaccaaaaagaaacaaatgaagCACTGGAAGAAACAGTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294516 lncRNA upstream 88761 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 139544 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 250948 16883041 ~ 16898394 (+) True LOC111196035
TU294461 lncRNA upstream 253591 16883025 ~ 16895751 (+) False LOC111196035
TU294303 lncRNA upstream 429861 16560852 ~ 16719481 (+) False G216941
TU294550 lncRNA downstream 79879 17264130 ~ 17264431 (+) True G217140
TU294658 lncRNA downstream 210788 17395039 ~ 17395249 (+) True G217222
TU294793 lncRNA downstream 592515 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 846375 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 915703 18099954 ~ 18161772 (+) True G217359
XM_007249475.3 mRNA upstream 3454 17140671 ~ 17145888 (+) False nsmce4a
XM_007249474.2 mRNA upstream 3454 17140674 ~ 17145888 (+) True nsmce4a
XM_007249469.3 mRNA upstream 19236 17109263 ~ 17130106 (+) True LOC103040130
XM_022684720.1 mRNA upstream 41635 17077039 ~ 17107707 (+) False ldb1
XM_022684738.1 mRNA downstream 2890 17187141 ~ 17261572 (+) False LOC103040431
XM_022684739.1 mRNA downstream 2896 17187147 ~ 17237633 (+) False LOC103040431
XM_022684737.1 mRNA downstream 2898 17187149 ~ 17261572 (+) True LOC103040431
XM_022684723.1 mRNA downstream 2899 17187150 ~ 17261572 (+) False LOC103040431
XM_022684725.1 mRNA downstream 2899 17187150 ~ 17261572 (+) False LOC103040431
TU294489 other upstream 141805 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 3801709 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 3833180 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 3834142 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 4045300 13091746 ~ 13104042 (+) True G216053
TU294912 other downstream 1127655 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1558982 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1653111 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 1983612 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 2158743 19342994 ~ 19345401 (+) False rrp12

Expression Profile