RNA id: XM_022684768.1


Basic Information

Item Value
RNA id XM_022684768.1
length 3012
RNA type mRNA
GC content 0.59
exon number 8
gene id map3k9
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35324800 ~ 35348312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAGATTGCAGATCGCTGGTCGAGCTCCGCCTTTCAagtgcaacacacacacgcgcgcacacactcCAGCACTTTGCATCGCTTTGCAGTGCGCGTGCGCGTGCAGGTCGACACCGAAGGTGCTGCACGTTCAGCACACAGCGCGAGCCTCTGCGGCCTCTGCGGCACGGGGCCGCGCGGGCCCGGTAGGGGTAGCAGCTGGAGCCGGTTTGCCCCCTCGCGCCCCCGACCCGCATGGATTTACCCCATGGATGACTCGGACGGCGCGGAGGCCGAGCGCGCGCCCCCGCGCGTGCCCGTGGCGACCGGGGCTGGCGGCTGGGGGACGGACGGGACCGGGGGGGAGTTTCCCGGCAGGTACGTCATCGCGGAACCGAGCACGGCGCAcgaggaggaggaagatgaagaagaggatgaggaggacGAGGCGCGCGGGCGCGGGGCGCAGCTGCACGTGTTGGAGATAGACTTCAgtgagctgctgctggaggagctgATAGGAGTGGGCGGGTTTGGTAAGGTGTACCGGGCGGTGTGGAGAGGGCTGGAGGTGGCGGTGAAGGCAGCACGGCGTGACCTGGACGAGGACGCGTGTGAGACCCTGCAGAACGTGCGACAGGAGGCCAGGCTCTTCTCCATGCTGAGACATCCCAACATCATGGCCCTGCTGGGGGTGTGTGTGCAGGAGCCCAACCTGTGCCTGGTGATGGAGTACGCCCGGGGAGGAGCGTTGAATCGCGCACTTGCTGGAAAACGTATCCCCCCGCACACGCTGGTGGACTGGGCCGTGCAGATCGCCAGAGCCATGCAGTACCTGCACTGCCAGGCCATCGTCCCCATCATACACAGAGACCTGAAGTCCAGCAACATCCTGATCCTGGAGCGCGTAGAGAACGAGGATCTGAGCAATAAAACCCTGAAGATCACAGATTTCGGGTTGGCGCGAGAGTGGCACCGCACCACTAAGATGAGCGCGGCGGGCACTTACGCCTGGATGGCACCCGAGGTCATCCGCTCCTCTACTTTCTCCAAGGGCAGCGACGTCTGGAGttATGGAGTGTTGCTGTGGGAGCTGTTGACAGGCGAGGTGCCGTTTCGTGGTATTGATGGACTCGCTGTGGCGTACGGAGTTGCCATGAATAAACTGGCACTGCCCATCCCCTCCACCTGCCCTGAACCTTTCACACGCCTAATGGAAGCCTGTTGGAGTTCTGACCCGCACGGCCGGCCACCCTTCTCCACCATCCTAGACCTGCTCACCTCTATTGAGGAGTCTGGATTTTTTGAGATGCCTGCTGAGTCCTTCCACTCGCTGCAGGACGACTGGAAGCTGGAGATACAGGAGATGTTTGATCAGCTGAGAGCCAAAGAAAAGgagtTGAGGTCGTGGGAGGAGGAGTTAACACGGGCTGCACTGCAACAGAAGTACCAGCAGGAGGCGCTACGGCGGCGTGAGCAGGAGCTGGCAGAGCGAGAGATCCACATCCTGGAGCGGGAACTTAATGTCATAATCCAGCAGCTTTATCATGAAAAGCCCCGCGCCGAGCAGCGCCACGGCATGTTCCGCCGCAGCCGCATCAAGCTGCGCCCTGGAGACCGCATCAGCCTGCCGTCCGGTACGACCCCCATCACTTCACACCTATTCACAGGGCCAGCATTAGCTTTTTgtctggacctTGTaatgaacaatccatgtgtgaaaatgatgctcatgctccctgaaccactctttcagaAACTGAGCCCCATCATtccctctctatctatctatctctctctatctttttctgtAGAAAATGAAGACTGCTGCTGTCCGTCTGACCTCCCAGAGTCTCCCGGTCAGTCATATCTCTGCATCCCCTTCCACAGAGAGGGCTCAGTTTCGGAAGGTTATGGTTCTGAAAGCACCGTGATTGGTCAAGGCCTTGACTCCTCCCCCAGTTTTTCAAGGCGGAGCCCTAGTGGAGGTCGGAGGTCAGATCTGATGCTGCTGGGGTGCGGGGCTTTGCTGGCCGCTGTGGGTCTGGGTTTCAATCTCCTGGATTCTGGGAGGCTGGAAGAAAGCACACGTCCAAAATGGGAGGGGCTTTTCCAGAAGGTTAGTGGTGGCCAGAGGAGAAGCTCCAGCCCCCCCACAAGAAAACTGTTTAAACGGGATAGCCCCCTGCGGCCCCCACCGCTGCCCCCCTCCCTCAcactcctttctctctcctccgTTTCGGACTGTAACTCAACACGTTCTCTACTTCGCTCGGACAGtgaggagctgctggtgctccGCCCTCCTACACCTCCTTCAGTGATGCCCCGCCCACTCTCACCTCCccaactgctgataaggcatcCACCTGCCAACCCTCTTGTCAACACTCACATAGAGAGTTTTAAGCGCAACCCTCGCCAATCGCTCACGCCCACACATGCCCCTGCAGCGCCCAGCGCCACCCGCAAGCTGCACCGCACGCCATCCGATGGAGCCATAAAGAAGGGCGGAGCAATGAACAACATCATACAGAACAACGCCCAGCCATCTCTTCCAAAAGCTGCACAGGAGCACACAGTGAATCCATGGGCAGTGAGAGATGACCCCTCAGAAGTACCTCGTCTTCCTGACCCAAACCTCATCTTTCCTCCCACGCCACGCCGCCGCTGCCAGCCAGAGCGCCCCAAAACTCTGGACTTCTTAGCTAGGCCACGCCCCTCACCCCGAGCTCGCTGCGAAAGCCAGTGGGGGGACTCTCCCGCTCGCACATCCAGCACTGAAACTCCTCCCACTGTGGAGTTTGATGGGGGTGTGGTTGTAGCACCCACACCGATGGAACAGCCTACCCCGTGCTCTCCCTGGGTGAATGACAGCCTTCTGGACCAGTCGGACGAGGGCCAGTGCAGGGACAGAACTAGACCTCTTAAACTAGAACCCATATTACCCAGAGACTCGCCTTACAAAATGAGACCCGGCTTCTGGTCCTGACTTCGGTCCTTCTGTggattttaaagcagcagtttggTCG

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300531 lncRNA upstream 8910 35309502 ~ 35315890 (+) True G221527
TU300523 lncRNA upstream 80849 35199650 ~ 35243951 (+) True G221522
TU300526 lncRNA upstream 106573 35212969 ~ 35218227 (+) False LOC103031497
XR_002651982.1 lncRNA upstream 179878 35135879 ~ 35144922 (+) True LOC111196036
TU300515 lncRNA upstream 270241 35053458 ~ 35054559 (+) True G221517
TU300576 lncRNA downstream 43372 35391684 ~ 35432694 (+) False G221545
TU300577 lncRNA downstream 43372 35391684 ~ 35432694 (+) True G221545
TU300567 lncRNA downstream 94901 35443213 ~ 35459370 (+) True G221540
TU300592 lncRNA downstream 208991 35557303 ~ 35727535 (+) True G221551
TU300640 lncRNA downstream 212521 35560833 ~ 35566330 (+) False G221559
XM_007247571.3 mRNA upstream 15889 35234443 ~ 35308911 (+) True slc8a3
XM_022685027.1 mRNA upstream 15889 35234443 ~ 35308911 (+) False slc8a3
XM_007247573.3 mRNA upstream 15889 35234443 ~ 35308911 (+) False slc8a3
XM_022685025.1 mRNA upstream 15889 35235154 ~ 35308911 (+) False slc8a3
XM_022685026.1 mRNA upstream 15889 35235487 ~ 35308911 (+) False slc8a3
XM_007247569.3 mRNA downstream 28425 35376737 ~ 35381446 (+) True med6
XM_022685028.1 mRNA downstream 37391 35385703 ~ 35456493 (+) True pcnx1
XM_022685029.1 mRNA downstream 37391 35385703 ~ 35456493 (+) False pcnx1
XM_022685030.1 mRNA downstream 37392 35385704 ~ 35456493 (+) False pcnx1
XM_022685031.1 mRNA downstream 114046 35462358 ~ 35485086 (+) True LOC103046445
TU300438 other upstream 299202 35018453 ~ 35025598 (+) True srsf5
TU300434 other upstream 327756 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 1141563 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1880079 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2647515 32613474 ~ 32677285 (+) False LOC103038412
XR_002651984.1 other downstream 521706 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 522748 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 621677 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 705834 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 706325 36054637 ~ 36056690 (+) False G221737

Expression Profile