RNA id: XM_022684774.1


Basic Information

Item Value
RNA id XM_022684774.1
length 961
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC111195988
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37866795 ~ 37869273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGTACAGAAAAATGAGTCTGATAAAAAAGCTCCTGCGCAGGACAGAacgaaaacacagcaaaaagaaGCTCATTAAATGGCTTCAGAAGGAGAGACTTCTTGCCAGAACACTGAAATGCCCTAGATGCGGGAAAAAGATGCATTTTAAGAAGAAAACCAGCATAAAGGATGGGTACACATGGATATGTAGACGGAATCATCATCGGCAGAATACAGTTCGTTCCATTCGACACGGATCAATTTTTAGCCGAAGCCATGTTCCACTGGTGTCATATATGAAACACATTCACAGATTTGCCCAAGGACTGCGGCTCCGGCAGGTAGACATGGTTGAGGAGGGACTTTGTGGTAGTAGTGCTACAATTACAAAATTAACCCAGAAGCTTAAAGGAGTGTGTGTCAATGCTATTCGCAAAATGAAGAGGCAAAAGAAGATGCAAATTGGTGGAGGAAGAGCATATGTTGTTCTTGATGAAAGCAAGTTTTGCCACAAACGGAAGTATGCACGTGGCCGTTTTGGAAACACCTGGCGAAGAAAAGCATGGGTGTTTGGCATGATGGAAATAAAGCGGAATCGCAGGAGACCCCTCCTAAAGGTGGTTAAGAGAAGAACAGCTGCAAAGTTGATTCCTGTTATTCAGAAATATGTGCGTTGTGGAACCACTGTGATTAGTGATGAATGGCCAGCTTATAAACAACTAGGACAACACGGTTACATTCATTATCAGGTCAATCACAAACGCTTCTTTGTACATCCACAAACaggagcacacacacaacacattgaGCGAGCATGGAGAACATTCAAGAACGAAGTGTACCGTTACAGGGGTAACTTGACCAAAAAATCATTGAAAGACCAACTTGCATTCATTGAATGGAATTACTGGAGGGGAAAATATCCAAGAGGTGTCCTTGGATGCCTCTTTGAAGACATTGGACTGAAGTATCAGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301551 lncRNA upstream 10341 37856147 ~ 37856454 (+) True G222254
TU301549 lncRNA upstream 23721 37842546 ~ 37843074 (+) True G222252
TU301548 lncRNA upstream 39544 37826986 ~ 37827251 (+) True G222251
TU301546 lncRNA upstream 74731 37791665 ~ 37792064 (+) True G222249
TU301538 lncRNA upstream 228758 37637753 ~ 37638037 (+) True G222241
TU301559 lncRNA downstream 63212 37932485 ~ 37933005 (+) True G222260
TU301560 lncRNA downstream 70028 37939301 ~ 37939897 (+) True G222261
TU301564 lncRNA downstream 156220 38025493 ~ 38025862 (+) True G222265
TU301579 lncRNA downstream 218031 38087304 ~ 38087600 (+) True G222280
TU301582 lncRNA downstream 276157 38145430 ~ 38145737 (+) True G222283
XM_007247539.3 mRNA upstream 211294 37646712 ~ 37655501 (+) True osr1
XM_007247542.3 mRNA upstream 723126 37099398 ~ 37143669 (+) True hif1a
XM_022685063.1 mRNA upstream 785171 37023337 ~ 37081624 (+) True prkch
XM_022685062.1 mRNA upstream 847493 37001307 ~ 37019302 (+) True slc38a6
XM_022684773.1 mRNA upstream 875311 36976406 ~ 36991484 (+) True mnat1
XM_007247538.3 mRNA downstream 202994 38072267 ~ 38075115 (+) True rdh14
XM_015605388.2 mRNA downstream 388230 38257503 ~ 38265158 (+) False c25h6orf203
XM_022685075.1 mRNA downstream 391569 38260842 ~ 38265513 (+) True c25h6orf203
XM_007247527.3 mRNA downstream 490337 38359610 ~ 38425069 (+) True sobp
XM_022685078.1 mRNA downstream 490338 38359611 ~ 38425069 (+) False sobp
TU301271 other upstream 858930 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 858930 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 879141 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 1457754 36403148 ~ 36409041 (+) True G221878
TU300884 other upstream 1810977 36054875 ~ 36055818 (+) True G221737
TU301771 other downstream 866686 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 1025829 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 1328443 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 1809229 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 1809229 39678502 ~ 39714015 (+) False G222694

Expression Profile