RNA id: XM_022684784.1


Basic Information

Item Value
RNA id XM_022684784.1
length 1979
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC107197625
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18975059 ~ 18990050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagtgagggagagaggggtgTTTCTAACTGGGAACAGAGCACGCACTGTTTCACAttactcacacagacacacatatacacacacacacacacactcttacacacacacatacgcacggTGAGaaggagaaagggagagaaaaagggGAGAAAATCCCAGGCACTTTCTTCTTGTGCTTGTTTAGCTGGGTGTATGGAGCCTGTGGGTCTGCAAAATGAAACTCTCATGTGTTCTGATAGTTCTCCTGACTAAGGCCTTCATTGAAGAGTTGGCTGAGGCTCTGAACGTGTCAGTGACCCCTGGGCCGGTCAGTATGTGTATGGAGGAAGAGAATATCACCCTGTCCTGTCTGGTGTCTCAGAGGAAAAGGACCAGCAGTGTTCTGGTTCTGCGCTGGCTCTACTTTCCCACGCCCGAAGACGAGCGCCTGGTGGTGAAGATGAACTTCAAGAAGGCCAAGTTTTATGGAAACTACAGCAAAAGCTTCGGCCGGCCCAAGTTTCACATGTGGGAGGAGATGGAGGGGCAGGTGTACAGTCTGCTGATCCTTAACGTATCCAGAGAAGACAGAGGCAATTACACCTGTAAAGTGCAGGAGATACGCAAACAGAGAGACAAGTGGAGGGCCTCGTCCAACGGCACAGGGAGCATGGAGCTTCGAGTGCACTATATAACAGCCTCAGAGAGAACGGATGATATATGGCGCTTGTTTCAAgCGAGTTTCTATTTGGTGAAGTGCTCTGAGAGCAGCTCTGGGGAAACAGTGACCAGTGTGGCCAGCTCAGATGCCAGCTCGCCTGGAATGCACAGGAAAGAGAAGAGACACAAAACATCGCCCAAATACATCACTGCACCACCTCCACAAATACCAAGGAAAGctCCAAATAAGCCGCGCAGAACCAAACTTCTAAAAGCTCAGCCTAAAAGAGCGTACACGCCGAGGGTGGCAGATGACAGCCTGACAtatgctgagctggagctggtcAAACCGTTGCCTGAAGCTAAAgccagcagcagcggcggctcAGTTACTGCACAGCTGGATCCCAATGCAAACGGCACAGGAACTGTATACGCCCAGATCCTCTTTGTGGAAAAGCAAGTGTGAACGCAGCTGAGACTGTTCTGAACCAGAATTATTTATGAGATCTCAGTTCActattgtgtgtatgtacagtatgtttgacTGATTATTTAgcagttttgcataaataatttatgttataatGGTACTGGTAAAACATCTGGcagatgtgtgttttatttcatttcttttctactTCTAGGGCACATTCAGCACTGTGCCTGTGAGCTCatggtgtattttttaaatctaatgaTATACGACTAGATGTgttacatttattctttttgttaaaaaaaagacaataagaaagaaaggaaagaaaggatCACGAGTGGCACAGCCGTCTGAGTGCTGGCAATAttattgggagattgctggctCGATCCCCAGTGATCCCAAGCCATCTGTGGATGTGTATCACAAAGAGCGCAGGACTtggcctttttctctctctgggggTGCGTGGAATGGCCCTCCCTCTCCCCCATAAAACACAGACTGGTAACAGAACTCTGGTGTGTTCAGCTGGCAATAAAGTTGTGATAGGAGGAATTTAGAAACGTGCTAAAAAAGAAGCTACTGGGTGATAATTGGTCATGATTGAAAACAGgattaaaattgtataaataaaaacatatattatacagtgaTTGATGCATATATATCTGATCTGTATGttatcccatttttttttctatttgagaTTCTATTTGACATTCACCACTGTGTCTGTGAACTGAagatatacatttttcttttttttttttacaaaatataatttgcaaTATTGTtggatttaattaaatatactgtacgtatttaattctgattatattggtaaaatgtataatataatgtgtgtgATAGTAAAGATTTTCAGCTTTTCAAA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295017 lncRNA upstream 35156 18939025 ~ 18939903 (+) True G217472
TU294976 lncRNA upstream 216871 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA upstream 216871 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA upstream 218468 18753917 ~ 18756591 (+) False G217439
TU294986 lncRNA upstream 224979 18747392 ~ 18750080 (+) True G217442
XR_002651918.1 lncRNA downstream 229463 19219513 ~ 19231760 (+) True LOC111195980
TU295330 lncRNA downstream 282887 19272937 ~ 19273154 (+) True G217696
TU295359 lncRNA downstream 372628 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 508014 19498064 ~ 19518320 (+) True G217768
TU295453 lncRNA downstream 594031 19584081 ~ 19584405 (+) True G217784
XM_007249534.3 mRNA upstream 27048 18942248 ~ 18948011 (+) True drgx
XM_015605843.2 mRNA upstream 27048 18942251 ~ 18948011 (+) False drgx
XM_007249533.3 mRNA upstream 36606 18909946 ~ 18938453 (+) True ercc6
XM_022684782.1 mRNA upstream 128035 18837344 ~ 18847024 (+) True cxcl12
XM_007249529.3 mRNA upstream 230732 18743206 ~ 18744327 (+) True LOC103030769
XM_007249535.3 mRNA downstream 27257 19017307 ~ 19019746 (+) True LOC103032870
XM_007249538.3 mRNA downstream 90675 19080725 ~ 19089231 (+) True LOC103033826
XM_022684789.1 mRNA downstream 105700 19095750 ~ 19144236 (+) True LOC103035106
XM_022684790.1 mRNA downstream 108182 19098232 ~ 19144236 (+) False LOC103035106
XM_022684791.1 mRNA downstream 126375 19116425 ~ 19144236 (+) False LOC103035106
TU295009 other upstream 128031 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 230828 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 658235 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1799326 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1967522 17004595 ~ 17007537 (+) True borcs7
XR_002651927.1 other downstream 177813 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 352944 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1030364 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1422194 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 3070916 22060966 ~ 22096652 (+) False mark3

Expression Profile