RNA id: XM_022684790.1


Basic Information

Item Value
RNA id XM_022684790.1
length 3344
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103035106
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19095750 ~ 19144236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcagagtgtgagagagagagagagggagagagagagaaagagagagggagggagggatgctGCCCAAAGCTGGAAGATAAGGTGCAACAGGGCGAGGCAGTGGACAAGAGTCTAGTGGTGATCCAAACATGTGGATGGACAAGAGCACTGCCCCCAGCGATGAGCACTATGCTAAGCCCCAAGATTAGGCAGACGAGGAGAGCCAGGTCTAAGAGCATGGTGATGGGAGAGCTGACCCGGGGCTCCAGCCGGCCGTCCTCCCCGAGCCTTCAGGAGAGGGCAGTGAAGGCGGGCTGGCTGAAGAAACAGCGCAGCATCATGAAGAACTGGCAGCTGCGGTGGTTTGTGCTCCGTACTGATCAACTCTACTTCTACAAAGACGAAGAGGAAACCAAACCACAGGGATGTATCCCATTACATGGCTGCCAAGTCAATGAGCTGACCGCCAACCCGGATGAGCCCGGACGGCATCTTTTTGAGATAGTTCCAGgcgGAACAGGAGAGAAGGACAGATCCGCTCTGAGCCATGAAGCCTTCCTCCTCATGGCAAACTCCCAGAATGACATGGAAGACTGGGTCAAAGCCATCAGGCGCGTCATCTGGGCTCCTTTTGGAGGAGGGATTTTTGGCCAGCATCTGGAGGACACAGTGCAATATGAGAGGAAGTTTGGGCCCCGGCTGGCCCCTCTGCTGGTGGAGCAGTGTGTGGACTTTATACGGGAGCAGGGTCTGAAAGAGGAGGGCCTCTTCCGGATGCCTGGACAGGCCAACTTAGTCAAAGAGCTTCAGGATGCTTTTGACTGTGGTGACAAACCTCTGTTTGACAGTAACACTGATGTTCACACTGTAGCATCTCTGCTGAAGCTCTATCTCAGGGAGCTGCCTGAGCCTGTTATCCCCTTTAACAAATATGAGGATTTCCTCACCTGTGCCCAGCTGCTACTCAAGGACGAAGAAGTGGGTCTCAGTGAGCTTGCACAGCAAGTGAAAACTCTCCCCCAGGCCAATTACAACCTACTGAAGTACATTTGCAAATTCTTGGATGAGGTTCAGTCCCACTCAAGTGAAAATAAGATGAGTGTTCAGAATCTTGCAACAGTATTTGGACCAAATATTCTCAGACCTAAAATGGAGGATCCTGTTACAATGATGGAAGGAACCTCTCAGGTGCAGCACTTGATGACGGTGCTGATCAGTGAGCATGAGCGACTGTACGGCAGCATGGAGTCTGAGACTTCCTCAGAACAGAGAGAGGCCCCTCAGGGTCAGCGCTTTATGGTGGGTTGGATTTCAGAGGAGGAGATCCAGCGTTGTCCTTCTTCCAGCCAAACATCCAGCCTTCCTGACCATGTGGGAGGCAGTGCTACATCTCTGGACATAAATACAGGTGCACTAACTACTGCCAAACCAGCACCTCAGGGAAAAGCTGGGGTGGCGGACAGCCCCAGCAAGCAGGCCAAGTCCCTCCCTTCATGGAAGTACTCTTTTAAAAGCGGAACGGCACGGGCCCAGACGCCTAAAATCGGGGGCTCCTCTGTGGACGTGTCCAGTCTGCCCAGCACTGGGAACTGGCTGATGAATGGACTGTCCTCACTGAGAAGCCATCGCCGTACATCTTCAGGAGAGAGAATGGGCAAAGACTCACCGCTGTCCCATCGCCTGTCTACCTATGATAACGTCACCTCATCCAGTCTGAGCGTGCCCAGTGTGGCCAGCACACCCTGGTCCACCTCCTCCTGTGAGATATCAGTGGCAGACTCAGTGGGAAGCGACCCCTCTGGACTGAACTCTGGAAAGGGGACGTGGTCAGAGGCGGGCTCGGCTAGAGAGAGGGTGGAGGAGAAAGTGTCAGAGGTCACGCAGAGTAGTGAAGCACTGGAGCTGTGTGTAAGCAGTGCAGGATGCAGTGAAAATGGGACTTTGGACGTGTCAGGAGATCAAGATGACAACTCGCAAGCACTTAACAGCCTCGTATTAGAGCTGAAGGATGAGCTGAAGAAACAGAAGATTAGTTATGAATCCCGGATACGAAAgttGGAAGAGACGAGTATGTTGTTACGTGAGCAGCTGGACAGGCTAGAGGAGGAGGCAGACCAGGAGAAGAAGAAATACAGAATGTTGGAGATTAAACTGCGGAACTCTGAGCGGGCCCGTGAGGACGCAGAGAACAGGAACCGACTACTGCAGAGCGAGATGGAGGAGTTCTTCTCCACTTTAGGAGATCTAACACTGGGGACAAGAACGAGTAAAATGTGACACTTACCGTGGAGAGATTCCGTTGTGGATGTGCTTGTTGTGGATGGAAATTTTAATCTCTTTACTCATGTATCATGGGTATTATGAGGTGGTGATGTGCTGTTTTGTTACAGCAACTTGATCAACTCTTCTCTTATGTAGCAAAATCTATTTCCTTTCCTCTCCTCATTCTTTAGTCTGAAGTTTTATgatatgtttaaattattattctcATTATCAGAATCTCAAAGGCCTCTCTTCCAGTATGCACAGATGATACCAAAGCATGACTTCCGTGATTGTTTGCAATTGATGTGATTGCCTCCTCACAGCGCTTTTCATAAGGCTGATCATTTCCATGTCAGTGCCTTTTGCGTTGATGCATGGTATTGAGAAAATACTGCTTCACCACAGATACGGTTATTTAACGCTTTCTCATTATGCCCGTTCCTAATTCCACTTTTCAGAGCTTCTGCACAAGTCTGTGTTGTTTGAAGTCTGTGACTTCAAACTGACTACAGCCGTCCATCTTGACACTAGTCCACTTTTAAATACAGGAAATGGACGGCAGTAAACAGTAACTGGCTTTGTTATGAtgactgttacacacacacatatactacgCACACATCCTTTGGCAGTCCCATTTACTGTATCTTAGGTAAAAGTACTATGGTAAAATGTTACAGGCGAAGATTTTAATTTTGACTttctaaaaaaatctatttaggCCACTGGTGTGTCCATAGTAATAGGATTATTTATTGCAACTAATTTACTATATAACTTATTTCTCAGGTggtgtttcttaaaaaaacaaacaaacacaaaaacaaaacacactgaataaacTTGCTGTCTTTCTGGTAGATGGTGGAAATGAATATAAAAGACGTTAAATACTTGACCGTGAATTGTAGTAGACAGTCTTTGATTATGTGATGAATTTGTGtatgctttaaaatgttctcGTGGTTGTTTTCCCCTCATGAAAGTGCCAAAGTAGAGGTCTTATGAAATGGGTATTGCTTTCTTATCATGGATCACTTGAAATGAAGTATAACTgcaaaaggtaaaaataataaacttctCATCATACAGTGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295017 lncRNA upstream 158329 18939025 ~ 18939903 (+) True G217472
TU294976 lncRNA upstream 340044 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA upstream 340044 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA upstream 341641 18753917 ~ 18756591 (+) False G217439
TU294986 lncRNA upstream 348152 18747392 ~ 18750080 (+) True G217442
XR_002651918.1 lncRNA downstream 75277 19219513 ~ 19231760 (+) True LOC111195980
TU295330 lncRNA downstream 128701 19272937 ~ 19273154 (+) True G217696
TU295359 lncRNA downstream 218442 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 353828 19498064 ~ 19518320 (+) True G217768
TU295453 lncRNA downstream 439845 19584081 ~ 19584405 (+) True G217784
XM_007249538.3 mRNA upstream 9001 19080725 ~ 19089231 (+) True LOC103033826
XM_007249535.3 mRNA upstream 78486 19017307 ~ 19019746 (+) True LOC103032870
XM_022684784.1 mRNA upstream 108182 18975059 ~ 18990050 (+) True LOC107197625
XM_022684785.1 mRNA upstream 108182 18975251 ~ 18990050 (+) False LOC107197625
XM_015605843.2 mRNA upstream 150221 18942251 ~ 18948011 (+) False drgx
XM_022684793.1 mRNA downstream 16417 19160653 ~ 19214321 (+) False LOC103040131
XM_022684794.1 mRNA downstream 23626 19167862 ~ 19201067 (+) False LOC103040131
XM_022684796.1 mRNA downstream 23627 19167863 ~ 19200959 (+) False LOC103040131
XM_022684792.1 mRNA downstream 23635 19167871 ~ 19216989 (+) True LOC103040131
XM_007249547.3 mRNA downstream 52425 19196661 ~ 19214321 (+) False LOC103040131
TU295009 other upstream 251204 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 354001 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 781408 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1922499 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 2090695 17004595 ~ 17007537 (+) True borcs7
XR_002651927.1 other downstream 23627 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 198758 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 876178 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1268008 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 2916730 22060966 ~ 22096652 (+) False mark3

Expression Profile