RNA id: XM_022684918.1


Basic Information

Item Value
RNA id XM_022684918.1
length 1952
RNA type mRNA
GC content 0.45
exon number 7
gene id rrh
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25184634 ~ 25192379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAAATGTATTTGAATGTGTTACAGAGGCCTTTCTAGCAGTCAGctatctctcaccaagaggtacattACCCAAATGTAGCCACTGAGAACCTTTTTATAGGGCATGGAAGAAAGCAATTTTACACCCTCTTGTCGCAGGGCTCTTTATAGGCTATACATTATTAACAAAGGCACAGAAAGTTTTACTGGATGTGAGCTCTTTAAGACTAATCTGCAACATTTTCTCACACTATTAAAACCACCACGTCTGTGAAAGACTTGAAAATTTGGTTTAGAGAGTTTAGACTTGTGGTATACTGTTTTGTGTAGCTCTATAGCTGTCAATATTGTTTTGTGGTGGTGTTGTTTGTGATATTCACAGCTATATAGACTATACAGTTTTCTCCATTCAGGCTGGAATCTTgttgttcactctctctctgcagatCTGATGTTTTAAGAATGAAAAGCCTTCATGCGAGGATTATGCCTGAAACAATGAGCTCCTTAGTGTTCACAAACCAGGCAAAGCCTAATCCTCCCCTCAACTTCACCTAGCTGACCACAGTCACTCCACCAATATTAACAATGCATAAACCCCAAAACCTCTGCCTACTTAACATGCCCcccatgttctctctctctctctgtctctctctctctctctctctctctctctctctcatatacaCAGAGTTTCCTAAACTCTCTCTTTTTGCAAATGCAGGAGGAAGGGCTGTGCACGGGATAGGCTGCTCTACGCcgctgtgtgctgtgtgttttaGGCCGGACTCTAGTGAATGTCAGAGGGACACAGAGCTTGTTTTGTGTGGATATGTGTGAGAAAGAAATGGGGCATGAAATGCTAAACTCATCGTCTGAAGCTGTTAACTATGGTGGAAAAAGTGCCTTCTCGCAAACGGAGCACAACATCGTCGCTGGATACCTCATTACTGCATGTGTGATCAGTTTGTCCAGTAACATTGTTGTGCTCATAATGTTCGTAAAGTTCAAAGAATTGCGTAATGCCACAAACGCTATCATCATTAACCTGGCCTTTACTGATGTTGGAGTGGCGGGCATCGGTTACCCTATGTCTGCTGCCTCTGACCTGTATGGCAGCTGGAAATTCGGTCACACTGGTTGCCAGATCTATGCTGCACTGAATATATTCTTTGGGATGGCCAGTATAGGCCTGCTGACAGTGGTTGCTATTGACAGATACATCAGCATCTGCAGACCTGATATAGGGCAGAAAATGACCACATGCTCATATACAATCTTAATTGTGGCTGCATGGCTGAACGCAGTGTTTTGGTCGTCCATGCCGATCGTGGGCTGGGCTGGGTACGCACCTGATCCAACCGGAGCTACCTGCACCATCAACTGGAGGAACAACGATGCGTCCTTTATCTCCTACACCATGGCAGTAATTTTTGTTAACTTTATTGTGCCACTGTCTGTGATGTTCTACTGCTACTACAATGTTTCAGTCACCATTAAAAGGTACAAGGCCAGCAACTGTCTGGAGAGCATCAACATAGACTGGTCAGACCAGATGGATGTAACTAAGATGTCTGTTGTAATGATCGTGATGTTCTTGGTGGCCTGGTCTCCTTACTCCATAGTGTGTCTTTGGGCATCGTTTAGCGATCCCAAAATGATTCCTGCACCAATGGCCATCATCGCCCCTCTCTTCGCAAAGTCATCCACTTTCTACAATCCCTGCATCTACGTTATCGCCAACAAGAAATTCAGAAGAGCCATCATAGGAATGCTACGATGCCAGACCCGTCAGCGAATCACCATCAGCAACCAGGTTCCCATGACGGCTTCTCAGCTGCCTCTCAACCAATAGATGATGACCTCTGAAGCTCTCTGCTCAGCGCTGGACGCTGTTCCCCATCTTCCTTCTTCACCACAATGTTGCCATAGTTTTCCcacttaaatattaaacagtccAACATTTTA

Function

GO: NA

KEGG:

id description
K04253 RRH; visual pigment-like receptor peropsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297352 lncRNA upstream 2651 25181445 ~ 25181983 (+) False G219144
TU297338 lncRNA upstream 45687 25133953 ~ 25138947 (+) False G219141
TU297340 lncRNA upstream 48571 25133953 ~ 25136063 (+) True G219141
TU297295 lncRNA upstream 99778 25084457 ~ 25084856 (+) True G219102
TU297267 lncRNA upstream 142845 25041237 ~ 25041789 (+) True G219074
TU297359 lncRNA downstream 529 25192908 ~ 25194235 (+) True G219150
TU297362 lncRNA downstream 2408 25194787 ~ 25198276 (+) True G219151
TU297366 lncRNA downstream 11655 25204034 ~ 25208010 (+) True G219153
TU297369 lncRNA downstream 17156 25209535 ~ 25215808 (+) True G219154
TU297371 lncRNA downstream 17156 25209535 ~ 25215808 (+) False G219154
XM_022684917.1 mRNA upstream 9926 25161727 ~ 25174708 (+) True dapp1
XM_015602442.2 mRNA upstream 386035 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 386035 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 397294 24779609 ~ 24787340 (+) True cdc25b
XM_022684969.1 mRNA upstream 506521 24658431 ~ 24678113 (+) True LOC103045503
XM_007237999.3 mRNA downstream 34062 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 34062 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 118464 25310843 ~ 25315607 (+) True LOC103043156
XM_022684920.1 mRNA downstream 119954 25312333 ~ 25315607 (+) False LOC103043156
XM_022684924.1 mRNA downstream 148085 25340464 ~ 25403594 (+) True LOC103042335
TU297354 other upstream 12391 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 342101 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1120846 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1476391 23696577 ~ 23708243 (+) True G218651
TU296278 other upstream 2965774 22217299 ~ 22218860 (+) True G218351
TU297390 other downstream 64571 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2032913 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2037778 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 2037780 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 2037781 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile