RNA id: XM_022684932.1


Basic Information

Item Value
RNA id XM_022684932.1
length 6316
RNA type mRNA
GC content 0.46
exon number 22
gene id slc4a11
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26143357 ~ 26269695 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCTGCAACAATACCTCACTCTCTACTTCAGTTTACCTGAGCGCGCGCCCGTTTCCACTGAAACACACCGGCCGCGAGGATGTTCTGAGGAGCGGTGTGAGCTGGATGTGTTTATTCTGAGCGGTTCCAGAGTTCAGGAGGAGATGAAGACTGACAGGGACGGAGGGGAGATGAGGGGGGTGACGGTGAACAGCTTCGCTGAAGAGGCTCCGTCCTCGGGCATGGCCAAGAATGGATACTTCTATCAGGAGATggAGCAGAGGGAGCGAGACGAGCAGGAGGAGGGGAGCGAAGACCGAGAGGAGGGTCAGGACTCTCCCATCCCATCAGGAGATGACATTCATCTCTACGGCAACCTGACACACCAAGGAGGGacagATTCTGATGTCCACGGCTGTGTCTTGCTCAACACGTCACGGAGAtACGTAAAGCTGATGAACTTCGAGGAGGAGATAAGGGCCCACAGGGACCTGGATGGTTTTCTGGAGAGGGCGAGCATTCTTCTGCATGAAGACGAGGCGTCGCTGGACGACGTGCTGAAGACCATGCTCCGGCACATCTCCCAGGACCCGCACACGGCTGAGCCCGGCTGCAACTTCGAGGAGATCATGAGCTCCCTCTTCACTGATGCTGGCTCACAGGAGGTCAACGACAGGTCGCCAAGTTTCCTTTTCTGTGATAACGTGCACCTACTGTCCGAGACGCTGCAGTGTGTCACAGCCACGGCCACGGGCATCCAGTACCAGCAGTCATGGCTCTGCATCCTCTGTAATGTGAAGAACCTGCAGAGGCGGCATGTATGTATCTCTCGGCTGGACCGGCCTCAGAACTGGGGGGAGAACTGCGCTGAAGTTCGATATGTCATCCTCATACTGGCACCTCTAAAGATGAAAAGCACTAAGACAGCTATGGAGCTGGGCCGGACGTTTGCCAGTATGTTCTCAGACATCTCCTTCAGGCAGAAGCTGCTGGAGAGTAAGACTCAGGAGGAGTTTAAGGAGGCGCTGGTCATTCAGAGGTACCACCTGACGGCCACCAAGCGCAAAACTACcactgtggaggaggaggagactgACCCACACAGCCACAAGCCACTCAAGtcTGCGGTCTCTGCTCAccttgtgtctctctctctgctgtgcAGGGGGCTCTGTTGTAGAGATTTTTTCAGAGTGGGCAGAGGCATCTATGAGGATCTATGTCGCCGCCTGCCCTTCTATCCATCTGACTTTACTGATGgcaTAGTGGGTAACAATAAAGCACTAGTGAAATACATGACgacgtccatcttcctctacaTCGCTGTTCTGCTTCCCGCCATCGCATTCGGCTCCCTCAATGATGAGAGTACAAGAGGAGAAAATAgcatctgtgtttctgtgtcagATGTTCAGAAGACGATCATTGGGCAGAGTATAGGTGGAATCATCTATTCTCTGTGTGCCGGTTCCCCTCTGGTCATCCCCCTAACTACTGCACCCATCGCCATCTTCATCAGTGtaatCAGGGGAATCTGCGATGATTATGAACTGGACTTTGCTGCATTCTATGCCTGTATTGGTCTGTGGAACAGCTTATTCCTTATCATTGGGGGGGTCTTCAACCTGAGCCTGCTTCTCGTCAAGCTCTTCAAGAGGTCAATAGAGGAGGTGATAGCTCTGTTCATTTCAATTGCTTTTGTAGCAGATGCTATGAAAGGCACTGTCAAGATCTTCCACAAATATTACCATGCTCCTACACTGGCCAATGGCAGCATAGAGGAGCTGAATCGAATAAGCAGGGACATGAACCTGACGGGGGAACTCCCAGAATCCTTTATTCTCTGCACACGAGCACGGCCGCTGCTCTGCCTGCTCCTCATGCTGGGCACCCTGTGGGTCGGCTACACACTCTACCAGTTTAAGAGGAGTCCGTTCCTGCATGCGAAGATGAGGGAGATTCTGTCAGACTGTGCTCTGCCCATCTCTGTGCTAATCTTCTCCTATGTGGGCTCCTATGTCTTCAACGACATCGGCTTGCCCGTGTTTGATTTTCACAAGGGTCCGGTGTTCCGAGTGGCCCCTTTAGAAAAGCTGACGGGGGCCAGTGTGCTGAGTGCTATGGGCCTGGGCTTTCTGCTCGCTCTTCTCATCTTCATCGATCAGAACATCGTGGTCTCACTCACTAATGCTCCAGAGAACAGGTTGCTGAAGGGCACGGCGTATCACTGGGACCTGACTCTGTCTGGCCTGATTAATATTTTGATGTCGGTGCTGGGCCTGCCGTGGATGCACGCTGCTTTCCCTCACTCCACTCTGCACGTCCGGCAGCTGGCCATCGTAGAGGAGCGGGTGGAGGGAGGGCACCTCTATGAGACaatagTGAGTGTGAAGGAGACACGGGTGACGTCGCTGGTGGCCAATATCCTGATCGGTGTGAGTGTGTTCCTGCTGCCTGTGCCGCTGCAGTGGATCCCCAAACCTGTGCTCTATGGCCTCTTTCTGTACATCGCCCTCACCTCCATCGACGGCAACCAGATGTGTGACCGCATGGCACTGTTACTCAAGGAACAGACATCCTACCCTCCCACTCACTACATCCGGAAGGTGCCGCAGAGGAAAATCCATTACTTTACTTTCCTTCAGATGGTGCAGCTGCTGTTTCTCTGCACGTTTGGGATGTACCCTCTCCCGTACATGAAAATGATCTTTCCTCTGCTAATGTTTATCCTCATACCTATCAGGAATTGTCTGCTGCCTAGGATCATCGATGCCAAATACCTGGACATCATGGACGCGCAGCACATGTAAACCCGCACGCACATTGCACCTCCAAGAAAAGGACTCTGGGAATTGTATTTCTGAAATGCAAAACTCTGGGAGGAAAAACAGACTGATTCTAGTGTTGAACAGCAGGCGTTCTGGTGAAGCACTgaaactgagaaagagagagagagagacggagagaaagagagatagtgtgtgtgtgagagagaaagagtgaaagaacagagagatagataacTATAGATAATAATGAAAGCAGGACTGTACTGTTGTCTGACTGTTTGACCTTGGACCTTGGTCAGTCATTGCTTCTCTCATGGTTTTCCCCATGCCAAAGCTTCTCTCTCTTTGGTTTATTCTGATGTACCTGTGCATCATTATGTGGACCAATCACTTGATTTATGAAACCAcctcatatacacacaaacacgtaCGCACATACGCACACATACGCAGCAGACGCTGACCGCTCGGTTCTTCTTGGTGCGTTTCTGATACCATGTGACAGGTCACTCAGCAAGACAGTGAAGAAGTGGATCTATCTGTAGCAATACCTCTTTGATGTtgaccacacactcactcacacatacacacatacatagacacaaacacaccagccGACCCTCTGTGTATCCTCTCCTGTCATCAGTTCTCATACATCAAGTGAACTCAAACTGTGTATCATAGACATTCCAGTGCGTTGTGGTGCGTCTCATTTGCTAACAAGTACTGATCAAGTCAGCACAGACCAAAAGAACACCTGCACCCTGCTTGGATACTGTGTCTCATAGCAATACAGTGTTGtagaatatgaatattttagatatttctaAGAGAGACGTTTCTTTTGAGGTTGATATATTTCTAGTTTGGATACACGGCGACGTATTCAGAATGTAACGTTAGTGCTGTCGCTTCAGGGATAGGGGATGCCGCGGCCAGATTCCATTCAAGTCGGAGAAGAGCTATTACCCACAAACCTTCCTCTCTACAGAACAAAGTCCTACCATAATAAGCTTTGCACATTACAGAACATCGCCAATGTCTCTGATCTGATCAAATGCAGccaaacaagcaaacacacacacacacacacacacttaaagaaacaagcaaacatttaaaTGCAAACACGTATAGGCATGTACTTTTAAACAGACTAGCATGCtggctttcacacacacacacacacacacacatgcacttaaTTCTGGCCCAGTATTCTTACACAATATAtggttaaaacaaacaaagcatggcttttataaaacagcaaaactattttttacagtttaaaacaaaaacagagcatttaaaaatgtcacATCAGGAGGGATCTGAAGGAAATTCTGTCACAAAAAAGCCTGGTTTTGTACGCAAAAATGCTAACAGGCTCTTCACAGATGACTTCTGTCAGTGATCTCTCTTGGTTTGTTATAGCAATATAACCATTTTTAAGTGCAGAACAACATGAAACATAATTATCCTACTTATTATTATCCTCACGACTGTTTCAGCGAGAGATCTCAAAGTAATAGTTACTGCATTTCATTCTGTCATACTCAAAACCCTAAACCGCACAAACAGTCCTCTCAGAACtgatttattaatattgtgAGAAAGAGAATGCATGaatgtgtaagagagagagagagagagagagagaaagagagagagaacaaatgagagaagagagagaatgggagagcCACAGAAgactagaaatatatatatatatagagcgaGATAATCGTAAAAGGGAGAGATTCAGGGAAGGAATTACAGGAGAAAGAGCtgcagaagagagaaagaaagacagagccATAGAACAGACAAATCCAGGAAGAGAATAACAGAAGaagctacagacagacagagtgagagtTCCACACTAGAGCTACAGgcggagagaaagggagagagaaccACATAAGAGAGAActacagaagaaagaaagagaaagccaTAGAactgagagacacagagaggaaaTTACTGAAGATagagctacagacagagtgcaAGTAAACAGAACATAGAGCTACAGAAGACAGAGCTACAGAAGACAGAACTACAGACAGAGGAAGAGATACAGAAAAGAGAACTAAAgaggaaataaagagaaaggtATAGAACAGAGAGGCACAGGGAGGGAATTACAGAAGATAGAGCCACGGACAGAGTGCAAGTACACAGAACATAGagctacagaaagagagaaatggagaaagaaCCATATAATAAAGAACGAcagaagaaagaatgagaaTGCCATAGTACAGAAAGACACAGGGAGAATTGCAGGATgcaaaagggagagagagctaAAGAAGAAATAACTCCAGAATCACAAAATACAGAGCTACAGAAGGGAAAGACAACATTGAGGACAGACAACGAGTGAGCAGGAGCCACACAAGATAGAGCTAGAAAgctagatagaaagaaagaaccaCAAAATAGATACATCCAGAAAATCCAAGAGAATAACAAGAGAAtataaagctacagacagaaaaaagagaaagccataGAACCGAGACACAGAGAATGATTTACAGAAGATAGCGCTATAgacagataaaaagaaaaaaagaaacacaacgAAGCAGATAAATGCAGGAATCCAAGACATAAAGAGAAGATAGAGTTAGAGacggagagaaggagagagaaagaaagtgccACAGTTGACAGAGCTacagacaaagacagacagagagagacacaaaagaGAGAACTCCAGACGGAGAAACACAAAATATAGAGTTACAGacgaaagaaagagaaagccatagaaaagagacacagagaatgTTTTAAAGAAGGTAGAGCTACAaacagagaaagggagagagacacaAAAGAGAAAACCCCAGAGGCAACATCACAGACAATAGAGCTACatataaaagaaagagaaagccatagaacagagacacagagaatgATTTACAGAAGATAGAGCTACAGACagacataaagaaagaaagaacgaaaAGACACATCGCAGATAGATCCAGGAAGAGAATCACAAAAGACAGAGCTATAGAAAAATATCACATAAAAGGAATCACATAAGATAGAGCTACAGAAAGAGAGCTACAAGATATGGAGCTATAGACAAAGTGCGCGATAGAGAGAGCTACAGAAAATAGGGCTACTGATATGTACAGATGGAGCTACAAAGAAAGAGGTACAGAGGCTTGAGCTACAGGCAGACAGCTTCACATAATGGAGGCAGAAAGACGATAACAGAAGAGAGCTActgacagagtgagagagccgcggaagagagagtgataaaaagagagaatcaCAGACAGTGAAAGAAAGACAGTGAATTTGTGGAAGTCTCACAATACTGCgggttttagtgtttttcattctttatacacactgtacagatCAGAGTATTACTAAGTTCACAATTTCTCCTCTTCGACCCCAGATGTAGTCGATCCACCAAGACCTTTAAAAGCTTTGGGAATTTGGGTTTTTTATAggttagcactggagctacatggcaaacattgtaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K13862 SLC4A11, BTR1; solute carrier family 4 (sodium borate transporter), member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297675 lncRNA upstream 196013 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 242488 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 336338 25747231 ~ 25807019 (+) True G219286
TU297544 lncRNA upstream 450840 25632476 ~ 25692517 (+) True G219282
TU297507 lncRNA upstream 697858 25445271 ~ 25445499 (+) True G219271
TU297737 lncRNA downstream 117218 26386913 ~ 26387761 (+) True G219416
TU297729 lncRNA downstream 193013 26462708 ~ 26474262 (+) True G219410
TU297725 lncRNA downstream 202934 26472629 ~ 26474304 (+) False G219410
TU297754 lncRNA downstream 393726 26663421 ~ 26663641 (+) True G219432
TU297755 lncRNA downstream 398356 26668051 ~ 26684245 (+) True G219433
XM_007230884.2 mRNA upstream 17745 26089983 ~ 26125612 (+) True c25h20orf194
XM_007230888.2 mRNA upstream 57207 26080829 ~ 26086150 (+) True LOC103044529
XM_007230887.2 mRNA upstream 57207 26080873 ~ 26086150 (+) False LOC103044529
XM_007230911.3 mRNA upstream 124805 26014323 ~ 26018552 (+) True LOC103023829
XM_022684928.1 mRNA upstream 459346 25642553 ~ 25684011 (+) False letm1
XM_007230877.3 mRNA downstream 4144 26273839 ~ 26284115 (+) True LOC103042087
XM_022684933.1 mRNA downstream 16082 26285777 ~ 26331700 (+) True eif2ak3
XM_022684934.1 mRNA downstream 65905 26335600 ~ 26469671 (+) True atrn
XM_007234673.3 mRNA downstream 422458 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 557653 26827348 ~ 26977774 (+) True LOC103024575
TU297390 other upstream 840770 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 971114 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1300824 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2079569 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2435114 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 955597 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 960462 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 960464 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 960465 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 960465 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile