RNA id: XM_022684976.1


Basic Information

Item Value
RNA id XM_022684976.1
length 4011
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC107197786
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 28874020 ~ 29005591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCAGTTGTCTGGTGACTCTGCAGTTGCTGGGACTTGTTGCCGATCAGTTTTCTTTCAGCATGGACTCTGAGGGCTTTGCTCTGGGAAGATGTGTGACCGTTCCGCATGCCCAGGCTGTTCTGTACTGCTTGGCCAGTAACTTCCTGGAAGTGAAACAGTTGGCCTGCACCCTCCTGCAGAAACTGCCTCCTGAAACAGTGGGCCTACAGGAGCCAGAGAGGCTGCAGTTTGTGCTCCAGGCTGCCCTGGACCTCAGCACCAGCACCAAGCCTTTTGACAGTGTCACAGCCTCCCACCTGCTCAATCTGCTGCTGCATCAAGAAGAACTTCAGCAAGCACTTCTCCACTGTGCTCAGAACCAAAACATCCATTTCCAGCTCCCAGTTCTAATCCAGTCCAATGCTTCTGAAGCCTCTGTCTTGGAGAAGAACACACTGGCAGTGATCCTGTTCTTGACTGCATGTCTGAAGGCTGAAGTTGTACAGGCTGAGATGTCTCTGCTGCAGGCAGCTGCCTCCTTTCCTCTGTATGGCAGAGCTCACTGTATCACTGCAGCCCTGCAGCAGCTCAGCACCGGGTCTCTCCAGCTGCAGGCTGAATGGACGGATGTAGTTTCGGACCTCATTGCGCTTTGCTACAGGATGTCTGATGTGGTGTCACCTGTCGTCCAGAGCTCCTCCCCTGAGGGCTTAATTCCTATGGATACAGATTCTGAAACATCTGCTGGCCTACAGAAGATCCTCCAGGAGATCCAGCCTCGTGACACCAACGACTTCTTCACCAGTGCTCGAGAATTGAATGCAACCTCAGACGAGCAGACACGTACACATCAGGCCAATGCCTCTGGGTCTGCAGGTGAAGCTTATCGGGTCACTGCTCAGATGGTGCTGGTCTGTTGCTGGAGGAGTATGAAAGAGGTGTCCATGCTCCTGGGAGAACTGTGTCAGAGCATGCCTCTTCATACCCACACCCACAAAGGCCTCATCACTGAGGAGCAGGTTAAAGGTGTTGGACAGTATTTTCGGGAGCAGCTTCTTCAGTCTCGGCACAGGGGGGCTTTTGAACTGGCCTACGTGGGCTTTGTGAGGCTGACTGACATGCTGTGCAGGAGCGGAAGTGCCACTCTGCAGCAGCTGCCAACCCTATGGTTAAAGGAGGTTCTGGAGGAGGTTAAATGCAGCGACCCCTCTTCTAAACTGTGTGCCACCCGCCGCAGTGCTGGAATCCCCTTCTACATCCAGGCTCTGCTGTCGTCTGAGCCAAAGGCCTCTAGTTGTAGCCTGTTGAAGATGACCATGAAGGAGCTGACTGCCCTGGCCATGCCAAGTCTTGAGGGAGCTACCGAGCACAGCACTGTCCCACAGGTCCACGCTCTGAACATCCTGAGGGCTCTGTATCGGGACACTCGTCTGGGGGAGAACATCATGCCATTTGTGTCCGAGGGGGTCAAAGCTGCTGTGCTTGGATTTACCTCTCCAGTTTGGGCTGTGAGGAATTCCtccactctcctcttcagcagCCTGGTCACTCGGATATTCGGagtaaagagaggaaaagatgaGCATTCCAAGAAGAACAGgatGACTGGCCGAGAGTTCTTCACTCGTTTTCCAGCCCTCTATCCTTTCCTCCTCAGCCAGCTGGAAGAAGCAGCAAGTTCAGTGGAAAGTGACTCTGGTCAAGTTAAGCTGCACCCCAGTCTGTTCCTGCTTTTGCTGATTTTGGGCCGGCTCTACCCATCACCAATGGATGGATCTTCATCTCCTCTAGGCCTGGCTCCTTTCATGCCCTTCATTATCAGTTGTGCCCGATCTGCTGTGTATCGCACTAGAGAGATGGCTGCTAGAGCTTTGGTTCCATTTGTCTTGGTCACCCACGTTCCAGCCACTATCCAGACCTTATTGGAGAGCTTTCCGATGGAACCTGGCCCAAGAACCCAGCAGAACCACATCCATGGAACTCTGCTACAGGTGCTCTTCCTGCTGAGATCTTACCTCACAGACACTCACCGGCCCCAGACGCCAGCAGAAGACCAAGACAGTGACATCATTAAAAACCTCCGGCCAAGACTGTGGCTGGCCACAAGgctgaaCCCGTGTCTGGTGACTCGAGGGGCGATGCTGGAGCTGTTGGCTGTTGTGTGTACGTCTTTCCCTGTTCCTGCAGAAGATTCTCAGTTGAAGAACCTGCGTGAAGAGACACTGGCCATTCTGATGGACTCTGAGCTTGTGGCCCCTCGAAGCCCTGATGAAGTACGGCTCTCGGGCCCCGGAACCACGCAGTATCTACAGAGCCTGTCTTGCTTAGCAACCAGTGTCGCCATGGACTCTGCCGGTATGTGGGGGATCCAGGATGTGGACGGTGTGCAGAAGGACCTCCTGAGGCGTCTGCTGCAGTGCCCGCATTATGAGGTGCGGCAGCTGGCCCTGGACAGGCTGCTGGAGAGACTGGAGAATATGCAGTGCAGTGACCTTCAACCTCTGCCCTTTGACCTGAGTGGGACCACCTTGACCCACCTAGCAATGAATGAGCCTCACAGCGCGTGCCTGTCCAAGgttCTGCAGGTTCTTACAGTTCTTCCCTTAAACTCAATCTTACCATGGAAGGATGGCAGTGTGTCTCTGAACTGTGAAGAAGCTCTAGAGTATCTTCTCTCTGTGGCTGAGAAATCTACACACAGCTTGGAGCTGCACTGTGCTGCCCTCTCCTTGGCCTCTCGACTGATGTTGCACCTGGTAGAAGAAAAGAAGCTGCAGGTGGAGGAGCTGGGTGGGGCTGCAGTTGCACATGTGGCCCTCTGGGGGGCGATGGTGGCACAGTGCTGTAGTGAGGAAAGGCCAGTGGAGGTGAAACTGATGGCTGCAGAGGTTTTGGTCAAGGCCACGCCCACTCTGCTGACCGCTTCGAACCTGCCGCTTGgtatCTCACACACCTTGGCGCTGTGGCAGAGTCTCTTCACCTTACTGCAGGATGAAGATCAAGATGTACGAGACAGAGCTGCTGACTTCGTCTGTTATGTGCCAAAACACCTACTCACCACAGGTGTTACCACAGGACCTGTTTCTTCTCCTGTTGCTCTGGAGATGGGGGTGAAACTCCTGTGCCAGCTGTTCCAGGTGTGGGGCCAAGTGGCAGTTGGTGTGATTAGTCTGACTGAGTGGCTGCTGGGAGATGACCAGGTGGAGCTGGGCAGTGCGGACACACCTGACTTGGATGAAGAGTTCCTCTTCGAGAAGGGAGATCTGAACCTGTGGGTAGAGCCCCTGCAGTGGGCACAgctattacacacacagctgtgtGCCCTCTCCACAGCACCAAGCTTACCCGCCATGCACCAGACGGAACTGGACCGCCTGTCCTCTCTAGCCAACACCAAAGCCCAGACTGCAGGACAGGCTCTAGCCGCTCTTTCTCCGCTACCTCAGTTTTCTGCCACCATAGAGCACGCTAAGCTCTCTGTGCTGAAAGAGAGGGCCACACTAGCTCAAAACATTGTCGCAATACTCAGACAAAAGGACCTGAGCTAAGAAACCAAAGAACCGAGCTGAGAACTTTTTCAATCAATCCTCCCTTTCATTTTAAACCAGTTAAACACAGCAATTTCAGACCATTTTCCTTGcaaattaagagagagagagggtggccAGAGCATTTTAAACTGGCCTGAGGAGTTCACAGGGAAGCGAGGGCTATTAAGTAGTGACTGCATGTCCGCTTTCACGCCTCGGCCAAGAGCTGCTGACGTCAGACCAATCTATTCTCTCTGTGCGACTGCCTACAAATATTATGATTAGTTTATAATTTCCTCCCTGTCTTTGAAGGAGTTTTATTTCTTCAAGGCCAGCCCAGGTCAGGACTGTAAACATTGTTTTAGtatattatgaatttatttcaAATGTGTGGTGGGCTCGCGTGCTTCCCTCAAAAACGCGGAATTATGTGCCGGCATGACGCTCGCCCACAAACTTGTTTTTCATCAAAATAAAAGACTCATTTTTATTACATGCA

Function

GO: NA

KEGG:

id description
K24169 THADA, ARMC13; thyroid adenoma-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298607 lncRNA upstream 13245 28844470 ~ 28860775 (+) True G220094
TU298532 lncRNA upstream 305988 28565015 ~ 28568032 (+) True G220032
TU298533 lncRNA upstream 305988 28565559 ~ 28568032 (+) False G220032
TU298535 lncRNA upstream 305988 28566519 ~ 28568032 (+) False G220032
TU298389 lncRNA upstream 649408 28219695 ~ 28224612 (+) False G219914
XR_002651985.1 lncRNA downstream 98181 29103772 ~ 29113662 (+) True LOC107197787
TU298761 lncRNA downstream 290496 29296087 ~ 29296359 (+) True G220209
TU298787 lncRNA downstream 405956 29411547 ~ 29420180 (+) True G220227
TU298798 lncRNA downstream 434435 29440026 ~ 29440318 (+) True G220236
TU298827 lncRNA downstream 484780 29490371 ~ 29490631 (+) True G220258
XM_007255778.2 mRNA upstream 132477 28735759 ~ 28741543 (+) True mcfd2
XM_015607474.2 mRNA upstream 132477 28735771 ~ 28741543 (+) False mcfd2
XM_015607472.2 mRNA upstream 242262 28624270 ~ 28631758 (+) False stpg4
XM_022684974.1 mRNA upstream 242262 28624272 ~ 28631758 (+) False stpg4
XM_007255781.3 mRNA upstream 242262 28624274 ~ 28631758 (+) True stpg4
XM_007255794.3 mRNA downstream 3045 29008636 ~ 29012667 (+) True zfp36l2
XM_007235270.3 mRNA downstream 464750 29470341 ~ 29483040 (+) True haao
XM_007235276.2 mRNA downstream 495415 29501006 ~ 29502519 (+) True LOC103023539
XM_007235275.2 mRNA downstream 508563 29514154 ~ 29515720 (+) True LOC103023222
XM_007235269.2 mRNA downstream 511913 29517504 ~ 29520975 (+) True LOC103021558
TU298587 other upstream 153359 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 324700 28490846 ~ 28549320 (+) False plekhh2
XR_002651960.1 other upstream 1637409 27230160 ~ 27236611 (+) False LOC111196018
TU298732 other downstream 135776 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 782348 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 782348 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 782348 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 782348 29787939 ~ 29793496 (+) False G220336

Expression Profile