RNA id: XM_022685030.1


Basic Information

Item Value
RNA id XM_022685030.1
length 7160
RNA type mRNA
GC content 0.58
exon number 37
gene id pcnx1
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35385703 ~ 35456493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGGAGTCGCTCGGAGCGAAGGATTCACCCGTGGCGAACATCGCTTTAAAAGGCAGCGGAGGCGCGGGGTGTGCTGGGATGGTGGAGGACTGTGAGGAGGCTCGAAGCTGCCGAGAAGATGGCCGCGGTTTGCGGGATTTACGGGGCAGCTGTGTTGATGAAATGACGGGAGGCTGCTAGGCGGCGGTGTGCCGGTGTGGGGTAGAGATTCCGCGGGTAAACATGGGCTCGCAGACCCTGCAGATCCTCAGACAGGGCGTCTGGGCTTCCATCACGGGAGGATGGTACTACGACCCCCATCAAAACACGTTCGTGAACGCGCTGCACCTCTACATCTGGCTCTTTCTGCTCTGCTTCCCCTTCACCCTCTACATGgCACTGCCTCCCACTATGGTGATTGTGGGCATTTACTGTGGTGTGATTGCTGCCATGTTCGTGCTGCTGAAGGCGGTAAACCACCGGCTGCACACGGCGCTGGACGAGGGTGAGGTCATCGAGCTTCGGGCCAAAGGTGGGCAGGGCCGAGGGGCAGCAGGGGAACGACAGAGGGACACACACCCCCAGCAGGAGGACTCGAATGGACCTGGGGATCCCGGAGGGGGAATTGAGATGGCTGATTTTGTTCGAGAGGAAACTCCGCCTGTTGACTGCAGCTCACGCAACTCCTACACAGGGATGGACTCCAGCcaccagATTGCATCCACTCGTGGAGGTCCAGCTGCAGCCAAAGATTTGATGTCGGACCCAAAGATGTACTGTCTCATCTCCAACGGCTCCTTCGCTTCCATGCAGCCCTCCACCTCGTTGGCTCAAGACCTTTACAGCTCCACCCCCCACCCTTTCAGCCAATCATTGTCCTCCTGCGACACAGAAATCACAACCCACGTTCCCGTCCACTCACAGTCTTTCCGTAAGGATCCGTCTCGTCCGCGTGGGCTCCCACGGACTTCCAGCTCAGCAGGCTCCGCGTTCCCGGACCCCTCCGTTCCAGAATTCAGCCTCTACCCTCCTCCGCGGAGGGGAGGGCTGGACCCTGTGTGCGAGCTGGACACCTCCAGGCCACAGAGGGTGCCAGAGGGCAGGGAGCAGCTGCAGGACTTGGCCGTGCCGTCTACATCGGGGACAGAGTGCTACAGGCACCATAAAAGAGACCGACGGAGATTGGCACGGTCCGTTTCCAGGGAAACTGGGGAAGGGGAATACGAGTGTGAAGGCAGGACTGGGCTGTACCAGGTGGAGGGGGTCAGAGGGGGGAGTTCGGGGGGCAGTGTTGTAAGGGAGAAAGGCGGAGAGCCCAGTATGGACAGCCTGAGGAGTCTGAGCACACGGAGCAGCGGCTCCACAGAGAGCTACTGCAGCGGCACGGATCGGGACACCAACAGCACGTTGAGCAGCCTGCACAGTGAGCAGACCAGCTCCACCCACGTGGAAAGTCTTCTCTCGCTGTCCGGCGACGAACGAGGGGCAGCCGGACCCACCGACTCGCTCAGTGCCAGCCTGGCCTCGGGGGAGGCCAACAAAAACCCCCATGCCAACGAACTCATCACCAAACCAGCCACCGATGACCCCTCCACCCCTGCGAACACATCGCAGACCACCAGCCAGGAGGGGGCGGAGCCTCGGCAGGAAGAGGGAGGCTTCAGGACTGCTGACCCCTCCCAGCCTGAGCAGACGGCGGAGACAGACGACGTAAAGCCCAAATCGGGAGATACTGTGCAGCGGGCAACTTCGTCCGCAGGCGCAGGCCGGAGTGGGCGACGTCGGAACGGTCTTGGTAAGAAGCGGGCAAACAGCTTCGACGCCAGCCGTCACCGGGACTACATGAGCCTGCGGGGGTTAGCCAAGCCTCGCTCTGCCGTTTTCGCTAAAGGAGAGGAGGACTCTAGTGATCAGAGCGAACTCAGCCACGCCTCCAGCCTCCACTCAGCCCACCAGCTCAGCACGGACTCCTCCTCTAGCACCTCCCACTCGTGCCCCTCACCTTCCGACGCCCGCTACGGCACCATTGCGGCCAAAGTGCACGGGCACGCCCGGACACACGCCAGCGAGCGAGCGAAGGAGAGGGACAGGGAGCGGGGGAAGAGGCGGTCATCTCGGCGGGCAGCCAGTGCGGGCAGCGCCAAGACGCACGCCCGCGTTCTCAGCCTAGATAGCGGCTCCGTGGCCACCACCTCCTCCTGCCTTACCGACCCCCACCACCTGGGGGCGCCTGCCGGTCCTCGGCCACTCACCACCTCCAAATCAGACCTGGAGGCGAAGGAAGGCGAGGTGCTGGATGCGGCATCGCTGCTGGGCCGAGCGTGCCAGCTGGAGTCCGTCACTCGCTCCCGAAACAGCCTACCCTGCCCCATCACACTCGCTGACACACACGATAACAGTGCTGCTGCCAGAGCCCCGGGCAGCGAGGACGCTGTAACGTTTCGGCGGGAGCGTAGCACGTTCCGTCGGCAGGCCGTCCGGAGGCGGCACAACGCCGGGAgtaaccccaccccccccacctCACTCATCGGATCCCCTCTCAGTCTGCAGGAGGCTCTGAGCCAGGCGTCTCAGGCGTCTGTGTCGGGGGTCAGAGGTCATCCGTCCCGCACGCCGTCCCAGGTGACGGTTCTGAGCGCTAGCGCCTCCCTGCTGGTCAGGAACGGAAGTGTGCAGCTCGAGGGCTCTCAGGATAAAGCCTCCACAGTGGGCGTGGCCAGCCTGCAAGAAGACTTCGGAAAGCTTACCCCTCCTCTGTACGAGGTTGGAGGATGCGATATGTCTCTCGTCAACTTTGAGCCAGCAACGAGACGAGCCTCCAAcaatatctgggaCACAGATTCTCACCTCTCTAGTTCTACCTCAGTTCGCTTCTACCCTCATGACTTGTTTTCTTTTCCTCAGATCCGGTTGAATCGTTTGTTGTCGATGGACccggagctgctggagcagcaggacGGCGATGTCAGTCCTGACCTGCAGGAGGCGCCGCACGGCCCACAGGACGGAGTgcacccacacacccaccccAACGCACACAAAGCCAAGCAGTACTACCGCCTGTGGCTGCTGCCCTACCTGTGGGTCGGCCTTCACTTCGACCGGCTCACTCTGCTCGCTCTGTTTGACAGGAACCGTGAGGTTTTAGAGAATGTTCTGGCTGTGGTGTTAGCCGTGCTGGTGGCCTTCCTGGGATCTGTGCTGCTGGTCCAGGGCTTCTTCACTGATATCTGGGTCTTTCAGTTCTGCCTCGTCATTGCCAGCTGTCAGTACTCACTACTGAAGAGTGTTCAACCAGACTCCTCTTCACCTCGACATGGTCATAATCGGATCATAGCGTACAGCAGGCCGGTGTATTTCTGTCTGTGCTGTGCGCTCATCTGGCTGCTCCATTATGGCAGTGTGAGATCCAGCAACTCCAGCAGGGTCAGCCTGTACGGACTTAAACTGACCGCCTCCATACTGCTCACTTCAGCACGAGACCTCATTATCgtcttcactctgtgttttcctgtgattttcttcgttgggcTGCTTCCTCAGGTCAACACTTTCCTCATGTACCTGTTTGAGCAGCTTGATATCCACGTCTTCGGAGGCAATGccTGTACCAGTCTCCCCTCTGCACTCTACAGTGTTGTGCGCAGCGTCATCACCGTGGCGATGCTGTACGGACTCTGCTACGGCGCGCTGGAGgagTCCTGGGATCCGCAACACATCCCCGTTCTGTTCTCTGTGTTCTGTGGGCTGCTGGTGGCCGTTTCGTATCACCTGAGTCGTCAGAGCAGTGACCCCTCTGTACTCGTATCTCTGGTGCAGTCTAAAGTGTTCCCCAACGTGAAGGAGCAAAACCCTGAGGACCCTCTGGCTGAGGTGCAGGACCCTCTTCCAGACAAACTCAAGAGCTCTGTGaACGAGAGGCTGCAGTCTGatctgattgtgtgtgtgctgatcgCTGTGCTCTACTTCGCTATTCACGTCAGTACTGTCTTCCTTGCTCTGCAGCCGTTCCTGAGTTATGTCCTGTATGGGCTGGTGGGGGCAGTGGGGTTGTTTACCCACTATCTTCTGCCCCAGATGAGGAAACAGCTGCCCTGGTACTGTTTCTCTCACCCGCTGCTGAAAACCAAAGAGTATTACCAGTTCGAGGTCCGCGgtgcagCTCATGTGATGTGGTTCGAGCGGCTGCACGTGTGGCTGCTGTTTGTGGAGAAGAACGTTCTGTATCCTCTGGTCGTGCTGAATGAACTCAGCGGCAGTGCCCAGGAACTCGCCAGCCCAAAGAAGCTCAACACAGAGGTGGGGGCGTTAGTAATAACTGTAGCTGGGCTGAAGTTGCTGCGCTCGTCCTTCAGCAGTCCCACCTATCAGTACGTCACTGTTCTCTTCACCATCCTCTTCTTCACCTTTGACTGCCGCCAGCTGTCTGAGACGCTGCTGCTCGACCTCTTCGTCATGTCCATCGTCTTCAGCAAgtTGTGGGAGCTGCTGTATAAGCTGCGTTTCGTCTACACCTACATCGCCCCATGGCAGATCACCTGGGGCTCTGCCTTCCATGCCTTCGCCCAGCCGTTTGCTGTGCCTCACTCTGCCATGCTGTTTGTGCAGGCCATTGTTTCAGCTATTTTCTCCACCCCCCTGAACCCCTTTCTCGGCAGTGCCATTTTCATTACCTCCTACGTCCGACCCGTCAAATTCTGGGAGAGAGACTACAACACAAAGCGAGTGGATCACTCCAACACCAGACTGGCCTCTCAGCTGGACAGAAACCCAGgTTCAGATGATAATAATCTGAACTCTATCTTCTATGAGCACCTGACGCGTTCTCTGCAGACGTCTCTGTGTGGGGATCTGCTGTTGGGGCGCTGGGGGAACTACAGCACTGGAGACTGCTTTATTCTCGCATCCGACTACCTGAATGCCCTCGTCCACCTGGTGGAGATTGGGAATGGACTCATCACCTTCCAGCTCCGCGGCCTGGAgttcagagGGACTTACTGCCAGCAGAGGGAGGTGGAGGCAATAACCGAGGGGGTGGAGGAGGAtgagggctgctgctgctgtgagcCGGGACACCTGCCCCATCTGTTGTCCTTTAATGCAGCATTCGGACAGCGCTGGCTGGCCTGGGAGGTCCTGGTTACTAAATACGTCCTGGAGGGCTACAGCATCACAGACAACAGCGCAGCCTCCATGCTGCAGGTGTTCGACCTCCGGCGCATTCTTACTACTTACTACGTCAAGggAATAATCTACTATGTTGTAGCTTCCCCGAAGCTGGAAGAATGGCTGGGTAACGAGGTGATGCTGGACGGACTGAGGAGTTGCAGAGAGCGCAACTATGTTGACCTCGACCCGACCTTTAACCCCAATATTGATGAGGATTATGACCACAGACTGGCCGGCATCTCCAGGGACAGCTTCTGCTCAGTCTACCTCAGCTGGATACAGTACTGCAGCAACAGACGACAGAAGCCGTTGAACAGTGAGAAGGACTCTGCGTTGGTGCTGCTGTGTTATGGTCTGTGTGTGCTGGGCAGGAGAGCACTGGGCACTGCAGCACACCACATGTCCAGtaaccTGGAGTCGTTCCTGTACGGGCTGCACGCTCTGTTTAAGGGAGATTTCCGGATCTCCTcagtgagggatgagtggatATTTGCTGATATGGAGCTTCTTAGGAAGGTGGTGGTTCCTGGAATCCGCATGTCTCTGAAACTGCACCAGGATCACTTCACCTCTCCTGATGAGTATGATGATCCAGCCGTGCTGTTTGAGGCCATTTCTTCTCACGAACGGACGCTGGTGATCGCTCACGAGGGCGACCCGGCCTGGCGCAGCGCTGTCCTCTCTAACTCGCCCTCACTGCTCGCCCTGCGCCACGTTCTGGACGAGGGCACCAATGAGTACAAAATCATCATGCTCAACCGCAGATACCTCAGCTTCAGAGTCATCAAggtgAATAAGGAGTGTGTGCGTGGCCTGTGGGCggggcagcagcaggagctggtgtTTTTGCGGAACAGAAATCCGGAGCGCGGGAGCATCCAGAACGCTAAGCAGGCTCTCCGCAACATGATCAACTCTTCCTGCGATCAGCCCATCGGATACCCCATCTACGTCTCCCCGCTGACCACGTCctactgcaacacacacacacagctcggACACATACTAGGAGGACCAATCAGCATCGCCAACATCCGCAACTTTATCGTCAACACCTGGCACAGACTACGCAAGGGTTGTGGTGCAGGTTGTAACAGTGGAGGGAATATGGAGGAGTGTGATGGCGGCGCGTTGTCGTGCGGGAGTGGAAACAGCGGGAATTCTGGGAATACCGGCACTGGAGTCAGCGAAtcacagcacagctccatctcACACGGCAGAGTGACTGCACCCAAcggccagcacacacacacccctcactcACTGGgtACGAGTCACAGCTCTCAGTCGGTTCAGTCCGCTCTGGTGCGTCACTCTCCTGCCCGCGGCTCTGTGGTCAGTCAGTCCTCGTCGTTTCGGTTCAGTAGTCGTCACTCGTCTCTGCGGACGTCAGCGACGGGTTTGGAGCCGTGTCGCTCGTCCAGCAGCCAGCTATCCCTCCGCACACTGCAGCTACGCCTTGGCTCCGGCCCCGCCCCCGACACACCCCAGCCCTCCAGCTCAATGTCAACACACTCTATCCCACCCTGCAAAcggcacgcacacacactcgcaggTCTGCTAAGCAGTGAGGGAGGAGGCATGGAGCTTCATCATCtgcaccatcatcatcaccatcatcaccaccacaacCCATCACTGTCCTGCATGAGGAGAGACGACATTTCTTACAGAGTGcagATAGTGGATGTAAGTCAGGTGCTGGACATGATTAACTTGTCTAAGAGGAAGGAGCTGGTGTGGCCGGATGAGTCTATGCGTCTGCGGGCGGGCCGGAGCTGTTGGAGGGAGTGGAGCCCATTAGAGGGCATGGAAGGACATGTGATTCACCGGTGGGTGCCTTGCGGTCGTGAGCCGGTCAGTCGCTCTCACATGGATAAGGCCATCCTGCTGGTTCAGGTGGACGACAAACTGGTGCCAATCATAGAGACAGGCGTGATAGAGCTGGGGGCAGaggtgtgagagagaaacacacacacacacacacacatatttatacatatatacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300531 lncRNA upstream 69814 35309502 ~ 35315890 (+) True G221527
TU300523 lncRNA upstream 141753 35199650 ~ 35243951 (+) True G221522
TU300526 lncRNA upstream 167477 35212969 ~ 35218227 (+) False LOC103031497
XR_002651982.1 lncRNA upstream 240782 35135879 ~ 35144922 (+) True LOC111196036
TU300515 lncRNA upstream 331145 35053458 ~ 35054559 (+) True G221517
TU300592 lncRNA downstream 100810 35557303 ~ 35727535 (+) True G221551
TU300640 lncRNA downstream 104340 35560833 ~ 35566330 (+) False G221559
TU300644 lncRNA downstream 106080 35562573 ~ 35566330 (+) True G221559
TU300641 lncRNA downstream 106570 35563063 ~ 35566330 (+) False G221559
TU300649 lncRNA downstream 162061 35618554 ~ 35623518 (+) True G221563
XM_007247569.3 mRNA upstream 4258 35376737 ~ 35381446 (+) True med6
XM_022684768.1 mRNA upstream 37392 35324800 ~ 35348312 (+) True map3k9
XM_022685025.1 mRNA upstream 76793 35235154 ~ 35308911 (+) False slc8a3
XM_022685031.1 mRNA downstream 5865 35462358 ~ 35485086 (+) True LOC103046445
XM_022684769.1 mRNA downstream 62919 35519412 ~ 35556136 (+) True LOC103029802
XM_007240056.3 mRNA downstream 407373 35863866 ~ 35867144 (+) False klhl31
XM_022685035.1 mRNA downstream 408659 35865152 ~ 35868147 (+) True klhl31
XM_022685038.1 mRNA downstream 414569 35871062 ~ 35888815 (+) False gclc
TU300438 other upstream 360106 35018453 ~ 35025598 (+) True srsf5
TU300434 other upstream 388660 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 1202467 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1940983 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2708419 32613474 ~ 32677285 (+) False LOC103038412
XR_002651984.1 other downstream 413525 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 414567 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 513496 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 597653 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 598144 36054637 ~ 36056690 (+) False G221737

Expression Profile