RNA id: XR_002651984.1


Basic Information

Item Value
RNA id XR_002651984.1
length 3004
RNA type misc_RNA
GC content 0.46
exon number 16
gene id gclc
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35870018 ~ 35888815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCATCAGTAACGTCTGCTAGAGGAAAAGGGGGCGGGGCGCCGTGCTGCACTCGGCTCCAGTGCGCGCTCCGACAGGGTGATTACCGTGTCTCAGCGCCGGTCTCCGGTTCAGCTCCGCCTGCCTTTAGCCTCATCTCATCCTCACCGCGAACTTTAGTCCCCCGGTCGTTATTCCGCTCAGCGGGGCACGGATATCCCGGATTCAGGCCTCGGCTTTACTCGCTAGGTGAGCGAACGCTGGCAGAGTTAGCGAGTAGCGCGTGAGTTAGAGAAAGAgcgctgctcctcctcctcctccttctgctTCACTCTGGGCTCTACTGGGTCTCTGCGAATTCGAAACAGGATTCCGCGGCCGGTGGCTCACCGAAGTTAGCTTAGCGAGGACACCCTACGCAGATCGCCGAGTGTAGAGCGGTACCGGTTCGTAAATCTGTGCGATGGGTTTACTGTCTCAAGGGTCGCCACTGAACTGGGCAGAGACCAAGAAGTATGCCGACCACGTCCGAAAACACGGCATCCTGCAGTTCGTCAACATCTACAACAAAGTGAAGGACCGACAGAAGGATGTGCTGAAATGGGGCGACGAGGTGGAGTACATGCTGGTAGAGTTGGACGACAAGAATGAAAAGGTGCGTCTGGTTCTGAATGGAAAAGATGTTTTGGAGACACTTCAGGAAAAAGGCGAAAAGATCAACCCAAATCACCCGACCCTGTGGAGACCGGAATATGGCAGCTACATGATTGAGGGCACCCCGGGCCAGCCCTACGGGGGCACAATGTCGGAGTTCAACACAGTAGAGGACAACATGGGAAAGCGGAGGAGGGAGGCCTCCACAGTTCTGACAGAGAATGAAACTCTCTGCACCATTACATCATTTCCTAGgttGGGTTGCCCAGGTTTTACAAAGCCGGAATGTAAACCTACTCCTATTGAAAAAGGAGTGTCCAAGTCCCTTTTCTTTCCTGATGAGGCCATCAACAGGCACCCCCGTTTCAGTACTTTGACAAGAAATATTCGTCACAGAAGGGGAGAAAAGGTGGTGATCAATGTACCAATTTTTAAAGACAAGAACACCCCCTCTCCCTTTGTGGAGACATTTCCTGAAGATGATGGGGAGGCAGCACGTGCAGTCCTCCCCGACCACATCTACATGGATGCCATGGGCTTTGGAATGGGCAACTGCTGTCTGCAGGTCACATTCCAGGCTTGCAGCATCAGTGAGGCACGATATCTCTATGACCAGTTAGCTACGTTCTGCCCTATTGTGATGGCGCTCAGCGCTGCATCACCATTTTATCGTGGCTATGTGTCAGATATTGACTGTCGCTGGGGTGTGATCTCTGCCTCTGTGGATGACAGGACTCGGGAAGAGAGGGGACTAGAGActctaaaaaacaataaattcaGGATCCACAAGTCAAGATATGATTCAATTGATAGCTACCTCTCTTGTTGTGGTGAGAAGTACAACGATATAGAGCTTACGATAGATGAGGAGATCTACAAGCAGCTCCTTGATGCAGGGATTGACAAGTTGCTTGCACAACACATTGCACACCTGTTTATTCGTGACCCACTATCACTCTTTGAAGAGAAGATTCATTTGGATGATGAGAATGAGTCTGACCACTTTGAGAATCTTCAGTCAACCAATTGGCAGACCATGCGGTTTAAGCCACCTCCTCCAAACTCTGACATAGGATGGAGAGTGGAGTTCCGTCCGATGGAGGTGCAGCTAACAGATTTTGAGAACTCTGCATATGTTGTATTTATCGTCCTTCTGACTCGTGTAATACTGTCCTACAAGTTGGACTTCCTCATTCCCCTTGTCGAAggtTGATGACAACATGAAAGTTGCCCAAAAGAGAAACGCAGTGCAAGAAGGAATGTTTTATTTTCGAAAGGATATCTTTAAAGGCTGCAACCCAGTCTTTGAAGCAGCTTCCACAGCAGCCCAGAATGGAGTGGAGAATGATGGGGACAGTGAAGAGTATATACTGATGAGCATTGACACCATCATCAATGGGAAGGAGGGAGTATTCCAGGGCCTCATTCCAATTCTGAACTGCTACCTGGAGAACATGGAGGTCGATGTAGACACACGGTGCACCATATTGAACTATTTGAAACTGATAAAGAAACGAGCATCTGGAGAATTGATGACCATGGCCAAATGGATGAGGGAATTTGTTGCCAAGCATCCGCAGTACAAGCAGGACAGCATCATCACTGATAAAATAAACTATGACCTGTTTCGGAAATGTGATCGAATTGCTAAGGGGCAGGAGGGGTGCCCTGAACTGATTGGAGAGCCAGTCAACAGAGGCAAATAGATGGTTCTTGTTAATTTTCTTAAGTTACCTattatgcatgaaaactaaagACCAAATTGTTTGATTAAAAGAAGAGCGTGGTCCAGATGAAAATAACCATAAGagattatattaaaaagcatGTATTGATTTAAGGGTTCAGTTGTATGGCTGAGGTTGTATATATCAGATTTTTGTGAATCTGAAACTTATTTTAATAAGATCAAATATGTAATTGATACATGCTGTGTATATATTTCCCTTGTTTATTGCTTTAGAGCCAGTGCTTAGTTGGTGTGAGGTGTAAATTGTAGCAAACACTAAACTTTGTACATTTAGGAAGGATTTGTTTTTCTGATTTGCTGCTGTAAATGCTGTTCTTTCAACAAGTgtactttttcttttcattatcaTGGAAAAAATTGTTGCCTCATTGGCTTTAACTGCATTGTCTTGAGTGAccttttaacatattttgtttCATGCTAAGATTTTTTGCTTAAGGTTTGTTGTACAAAAACTGAATTGTTGATGTGTGCACAGCGGGATTTTTTACAAAACGCAGACATCTGACAACAAGACAAGTGATTTGGTGCTGAACAGGTCTGTGTGAAACATGTGACTTGTTACAATTCATTGTGCATTAAAGCAGGCTAATTGTGATAGTGCACTTGGTATCAAGTTTAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006979 response to oxidative stress biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006750 glutathione biosynthetic process biological_process
GO:0009408 response to heat biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0009725 response to hormone biological_process
GO:0006534 cysteine metabolic process biological_process
GO:0006536 glutamate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004357 glutamate-cysteine ligase activity molecular_function
GO:0016595 glutamate binding molecular_function
GO:0043531 ADP binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K11204 GCLC; glutamate--cysteine ligase catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300802 lncRNA upstream 109026 35755831 ~ 35760992 (+) False G221682
TU300801 lncRNA upstream 109026 35756419 ~ 35760992 (+) False G221682
TU300800 lncRNA upstream 109589 35755831 ~ 35760429 (+) False G221682
TU300799 lncRNA upstream 110994 35757746 ~ 35759024 (+) False G221682
TU300803 lncRNA upstream 111083 35757746 ~ 35758935 (+) True G221682
TU300841 lncRNA downstream 28874 35917689 ~ 35930336 (+) True G221714
TU300842 lncRNA downstream 53033 35941848 ~ 35945034 (+) True G221715
TU300846 lncRNA downstream 53033 35941848 ~ 35945034 (+) False G221715
TU300847 lncRNA downstream 53033 35941848 ~ 35946885 (+) False G221715
TU300848 lncRNA downstream 54060 35942875 ~ 35945693 (+) True G221716
XM_022685035.1 mRNA upstream 1871 35865152 ~ 35868147 (+) True klhl31
XM_007240056.3 mRNA upstream 2874 35863866 ~ 35867144 (+) False klhl31
XM_022684769.1 mRNA upstream 313882 35519412 ~ 35556136 (+) True LOC103029802
XM_022685031.1 mRNA upstream 384932 35462358 ~ 35485086 (+) True LOC103046445
XM_022685028.1 mRNA upstream 413525 35385703 ~ 35456493 (+) True pcnx1
XM_007240054.3 mRNA downstream 12091 35900906 ~ 35937685 (+) True elovl5
XM_022685041.1 mRNA downstream 13488 35902303 ~ 35937685 (+) False elovl5
XM_022684770.1 mRNA downstream 89446 35978261 ~ 36063654 (+) True arfgef3
XM_007247340.3 mRNA downstream 181442 36070257 ~ 36075234 (+) True cnrip1
XM_007247338.3 mRNA downstream 187683 36076498 ~ 36099653 (+) True LOC103037384
TU300438 other upstream 844420 35018453 ~ 35025598 (+) True srsf5
TU300434 other upstream 872974 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 1686781 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 2425297 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 3192733 32613474 ~ 32677285 (+) False LOC103038412
TU300860 other downstream 81174 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 165331 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 165822 36054637 ~ 36056690 (+) False G221737
TU300884 other downstream 166060 36054875 ~ 36055818 (+) True G221737
TU301085 other downstream 514333 36403148 ~ 36409041 (+) True G221878

Expression Profile