RNA id: XM_022685058.1


Basic Information

Item Value
RNA id XM_022685058.1
length 1649
RNA type mRNA
GC content 0.54
exon number 6
gene id ppm1a
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36899056 ~ 36927397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGTCctggcgctgctgctgctgtagctagTCGGGGTTGTTTGGTTGCTGGGGGGGGCAGGAGAGCAGCCTCGGCCGCGCGCGCTCTTTATCTCTATCTCAGCTTTTTAATTTACACACAGCCGCGTCCCGTCGGGTCGCATCGTAAACCGCAGGATGGCTGCTGCCGGGGTCCGGAGCGGGGGTGTCCGCTCCttcacacactgaacactgaaaacacacaacCAGAGCCCGTGTGTTAGCGCCccgtctctctccctctttctctctctctctctgctttcttctcagtgtctctctccccgtctcctcctctctctatatatatttggGATTTTAGATTTTCAACCTCCAGGATGGGTGCGTTTTTGGACAAGCCAAAGATGGAGAAGCACAATGCTCATGGTGATGGTAATGGGCTGCGCTTTGGCCTGAGCAGCATGCAGGGCTGGCGAGTGGAAATGGAAGATGCCCACACAGCCGTCATTGGCCTTCCCAATGGCCTTGATCCGTGGTCCTTCTTCGCTGTTTATGACGGGCATGCAGGCTCTCAGGTGGCACGCTACTGCTGTGAGCACCTGCTGGAGCACATTACCAGCAACCCTGACTTCAGGGGCGGTGGTGGCGGTGGAGGGGTCGACGGTGGCACTGATGAGGAGCCGAGCGTGGAGAGCGTGAAGTGTGGTATCCGCACTGGCTTTCTGCAAATCGATGACCACATGCGGCAGATTTCAGAAAAGAAACACGGCGGCGCAGACCGCAGCGGCTCTACAGCGGTAGGTGTGATGATCTCACCACGGCACGTCTACTTCATCAACTGCGGAGACTCACGCGGCCTGCTGAGCCGCGGAGGTGCCGTCCACTTCTTCACGCAGGACCACAAGCCCAGCAACCCACTGGAGAAGGAGCGCATCCAGAATGCCGGCGGGTCCGTCATGATCCAGCGCGTTAATGGCTCCTTGGCTGTCTCCAGGGCTCTGGGGGACTTTGACTACAAATGTGTTCATGGTAAAGGTCCCACGGAGCAGCTGGTGTCACCAGAGCCTGAGGTGTACGCCATCGAGCGCTCAGACACAGAAGATGAATTCATCGTGTTGGCCTGCGATGGGATCTGGGATGTGATGGCCAACGAGGAGCTTTGCGATTTTGTCCGCTCACGACTGGAGGTCACTGATGACCTGGAGAGAGTCTGCAATGAAATAGTGGATACCTGCTTGTACAAGGGTAGCAGAGACAACATGAGCGTTGTATTGGTGTGTTTTAGCGGAGCGCCAAAGGTTTCGCCGGACGCTgtaaagagagaggcagaactGGACAAATATCTGGAGGGCCGTGTGGAGGaGATCCTAAAGAAACATGGTGATGAGGGAGTGCCCGATCTTGTGCATGTGATGCGAATGTTGGCATCAGAGAGCATCCCAAACTTACCGCCGGGAGGAGAACTGGCTAGCAAgCGAAGCGTCATCGAAGCAGTATATAACAAACTTAACCCATACAGGAGTGAGGACACAGACCCCGACATCTTTTTCTTTCGAGGGTTCAGTTAAAGACTGACCACCATGACCACCATCTCCTCAGAATCATGTGGAATATTTCTTGTATGATtgttgaatatactgtataatgaaatttaaacatatttccCCACA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301248 lncRNA upstream 1428 36888680 ~ 36897632 (+) True G222004
TU301207 lncRNA upstream 170971 36726518 ~ 36728089 (+) True G221973
TU301210 lncRNA upstream 170971 36726518 ~ 36728089 (+) False G221973
TU301100 lncRNA upstream 275265 36620288 ~ 36623795 (+) True G221891
TU301086 lncRNA upstream 453688 36443306 ~ 36445372 (+) True G221879
TU301261 lncRNA downstream 53678 36981075 ~ 36991478 (+) False mnat1
TU301262 lncRNA downstream 53678 36981075 ~ 36991478 (+) False mnat1
TU301263 lncRNA downstream 53678 36981075 ~ 36991478 (+) False mnat1
TU301380 lncRNA downstream 123823 37051220 ~ 37052681 (+) True G222103
TU301383 lncRNA downstream 139120 37066517 ~ 37151937 (+) True G222105
XM_015605417.2 mRNA upstream 21130 36858952 ~ 36877930 (+) False pcnx4
XM_007247554.3 mRNA upstream 21130 36858965 ~ 36877930 (+) True pcnx4
XM_022685056.1 mRNA upstream 21130 36858967 ~ 36877930 (+) False pcnx4
XM_015605419.2 mRNA upstream 42897 36827033 ~ 36856163 (+) True LOC103026999
XM_007247559.3 mRNA upstream 131827 36735850 ~ 36767233 (+) True tdrd9
XM_007247546.3 mRNA downstream 8664 36936061 ~ 36942741 (+) True LOC103023682
XM_022684773.1 mRNA downstream 49009 36976406 ~ 36991484 (+) True mnat1
XM_022685062.1 mRNA downstream 73910 37001307 ~ 37019302 (+) True slc38a6
XM_022685063.1 mRNA downstream 95940 37023337 ~ 37081624 (+) True prkch
XM_007247542.3 mRNA downstream 172001 37099398 ~ 37143669 (+) True hif1a
TU301085 other upstream 490019 36403148 ~ 36409041 (+) True G221878
TU300883 other upstream 842370 36054146 ~ 36056690 (+) False G221737
TU300881 other upstream 842370 36054637 ~ 36056690 (+) False G221737
TU300884 other upstream 843242 36054875 ~ 36055818 (+) True G221737
TU300860 other upstream 926706 35969989 ~ 35972354 (+) True G221728
TU301259 other downstream 49046 36976443 ~ 36987654 (+) False mnat1
TU301271 other downstream 73688 37001085 ~ 37007865 (+) False slc38a6
TU301269 other downstream 73831 37001228 ~ 37007865 (+) False slc38a6
TU301771 other downstream 1808562 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 1967705 38895102 ~ 38898819 (+) False oip5

Expression Profile