RNA id: XM_022685170.1


Basic Information

Item Value
RNA id XM_022685170.1
length 2077
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC103028407
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 43189360 ~ 43193440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAACTAATCGGGAGACGAGCTCTCAAGTCAGTCTGAAGCTCCTTGAGCCCTGGACGGTTTTCATCTTCTCGAGCGCTTGAACAGAACAACCTGCAGAAATGGGTCGCTACACTGGGAAAAGCTGCCGCTTGAGTTTCATGTTGGGGATAATGTCGGTGTTCTTTACAGCAGAAATAGTTGGAGGATACGTAGGAAACTCCATAGCACTAATATCGGACTCCTTCAACATGCTGTCCGACATCATATCGCTCTCTATGGGCTTGTTAGCCGCTCGCGTTAGACGACGTAACGGGTCGAGACGCTTCACTTATGGCCTGGCCCGAGTGGAGGTCGTAGGTGCGCTGTCCAACGCTGTGTTCCTGTCTGCCCTGTGCTTCACCATCGCTGTGCAGGCACTGAAGCGGATCATTGAGCCAGAGCGCATCGACAAACCAAGGCTGGTGCTGATCGTCGGCTCAATCGGTCTGGGCATTAACATTGTGGGACTTGTCATCTTCCAAGATTTCAGGATGTTGTTGAGGAAACTTAAATGTCAATCTGACACTGATGAAGAAACAGGTCATCCACAACAGAGAGATGTAGAAGGAGAAGAACCAACAGAGGAAGAAGGTCAACCACTCAATATTAGAGGAGTGTTACTCCACGTGCTGAACGACGCCATGGGCTCACTTGTGGTAGTGGTGACTGCAACTTTGTTCTATGTGTGGCCGGTGGATGCGGAAGGTCCCTGCACCTGGCAGTGCTATGTGGACCCCAGCATGACTCTGGTGATGGTCGGCATCGTCATTTTCTCAGGGGCTCCTTTGGTTAAAGAGGCGGCCTGCATACTGCTGCACATGATCCCTCGCGACATCAACTTCTCAAAAGTCGTGGAGGATGTGTGCAGACTTCCTTGCGTCATCAGTGTTCACGAGGCCCATATGTTCGAGCTGACGAAGGGTCGTTTTGTGGCCACCTTGCACGTCAGAGTGAGCCCTGAACTCCACAACTCCCACTCTGGAGTCATTACTCTCCACAGGCAGATCAGAGAGGTGTTCCACAAAGTCCGGATCCACAGCGTGACCGTTCAGCTGGAGCTGGGAGAAGGGATCTTAAACAACTGCCGCTGCAGCACCCCCTGCCTGTCCCCATCCTGCCTCAAAAACTCCTGCTGCCAAGCTGATGTCCCAGCACTTTCAGTCTGCAAGGCCAACCTGCCTCTTTACCCTGGAGACCTGCCTGTAAATGAATGTGATAAGAGCATACTGAAAGAACAGGAAGCAATGATGTCCAGCAAATTTGCAGCAGTCACTAAGTTTTAACTAGTCTGTCACTGAGGTAAAAATGTAGTCTGTGGAAGCTTTGACTTGCTCTGTAAGTTCAGAGATAAGGCCTAAACTGGGGCTGGTGAGAAGTTATTCCAAGTTTAGCTTCAAGACCGTATTATGCCCTACAGGGTAAATAATGCATGTTGTTGGACTTGGTGTGTCTAagtcagtggttctcaaaccaTATAGACCATGTTTCTCCCTTGAAAACATGTTAAGCTTCCAGGTACAACCTGCTGAGGCTGCTGCGAGGGCCTTGCACGCTTTTTACAATCGgcaaattattgattattgcaTCTGGCCAATGCAGTATGCCTAATGAGACACATTAGAAAGCTTGAGATTGAGCTTGAGAAGAATATAACAGGAATGTGAGACAATGTAGTAAAACTACAGTGTCTACATGACATACGCTTGAACCCTAGGCTAATTTTCAGCTATTAATCCTAATGCAGAAACTACTGAGAAAATGTGGAGTTCTGCATGGTTCTATTCTAGGGCCAGTTAAACTGATAATAGTTTTAGTACTAACGTTTTGAAAGAGTAAAGAACTTTAGCATAGGATTACACATTCAGGGTCTAACCAGCTAGcctttaaacacaaacaaatcacaaccaaacatttaaaaattacacGTGAAAACTTCAAAGATTTCAATCATTAATATTTTGTGCATAAAACAAATTGTGAGATTTGGTATACCACCTTAGGGTGCTTTACATATCACCAGCAGTACCAACACCAGAGTTTCAGAAACTCTTTGGGCT

Function

GO:      GO:0044765

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302907 lncRNA upstream 175125 43013989 ~ 43014235 (+) True G223245
TU302903 lncRNA upstream 247687 42939207 ~ 42941673 (+) True G223241
TU302871 lncRNA upstream 458437 42730597 ~ 42730923 (+) True G223218
TU302857 lncRNA upstream 559097 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 656938 42532110 ~ 42532422 (+) True G223201
TU302954 lncRNA downstream 2628 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 2628 43196068 ~ 43203769 (+) False G223274
TU302957 lncRNA downstream 2628 43196068 ~ 43203769 (+) False G223274
TU302958 lncRNA downstream 2628 43196068 ~ 43203769 (+) False G223274
TU302963 lncRNA downstream 18950 43212390 ~ 43214161 (+) True G223276
XM_007238579.3 mRNA upstream 253525 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA upstream 253525 42908521 ~ 42935835 (+) False rab11fip2
XM_007238581.2 mRNA upstream 387075 42774245 ~ 42802285 (+) True fam204a
XM_007238585.3 mRNA upstream 467426 42711460 ~ 42721934 (+) True LOC103047539
XM_022685162.1 mRNA upstream 817883 42243811 ~ 42371477 (+) True gfra1
XM_022685181.1 mRNA downstream 107446 43300886 ~ 43310949 (+) True LOC103043584
XM_022685182.1 mRNA downstream 138077 43331517 ~ 43335981 (+) False LOC111196053
XM_022685184.1 mRNA downstream 138078 43331518 ~ 43335986 (+) True LOC111196053
XM_007238564.2 mRNA downstream 286979 43480419 ~ 43569433 (+) False LOC103041531
XM_022685185.1 mRNA downstream 287460 43480900 ~ 43569433 (+) False LOC103041531
TU302940 other upstream 23226 43163281 ~ 43166134 (+) True G223269
TU302942 other upstream 23823 43164185 ~ 43165537 (+) False G223269
trnag-gcc_49 other upstream 487132 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 487301 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 487633 42701657 ~ 42701727 (+) True trnag-gcc_47
TU303125 other downstream 418183 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 486746 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 1702737 44896177 ~ 44899645 (+) False mcph1
TU303518 other downstream 1786998 44980438 ~ 44981140 (+) False polh
TU303660 other downstream 2053932 45247372 ~ 45258901 (+) False gng4

Expression Profile