RNA id: XM_022685181.1


Basic Information

Item Value
RNA id XM_022685181.1
length 1621
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103043584
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 43300886 ~ 43310949 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AtttaccttctgagaactctcctcactGCTGCTGGCTGGACAGTAATGTCTGGTAAATATCAAATTCTAAAAGTATcagttattaatacattttaatacatgaaGTCTCATATGAAAAGTCTCAAAGAAGGATCTTAAATCTAGAAGGTGTGGGTAGATATCTCTGTGACAGTTCTCGTAGACTCCTCAGGGTGTTGCGTGGGAAATCTTTCAGGGGAGCTGGTGTGAAGCTGGCGTTCCCCACCCTATTCATCAGGATAGCCCAGAGAGAAGTCATGCAGGGCTGGACAGGGCAGTAAACACTCGCTCATGGCTCCACGATACGCTCCAAGCCTTCGGTCACGCATGCCGCCTCTGGCCATCGTCCTGCAGGTCAGCTTTATAGTACTGTTTGCCTTTTTTGTGGAAACTGGAGATCCTGAGGAGGGTGATGAGAAGTTCATTAACTCATATGCAAACTTTCAGGACGTTCATGTGATGGTGTTTCTTGGTTTCGGGTTCTTGGCTTCGTTCCTGGTGCGCTATGGCTTCAGCAGCGTGGGCTTCAGTATGCTTGTGGCCGCCATGGCAGTTCAGTGGGCCACCCTGCTCAACGGCTTCCTGCTGACCTCCTCTCCCAGCTGGAAGATCCGGATTAAGATGAAAAGCTTGGTGGACGCTGAGATCTGTGCGTCCTCAGCGCTCTTGGCCATGGGGGCCGTCCACGGAAAGACCAACCCAGTCCAGCTCCTGCTGATGTCTCTGATGGAGGTCACAGGGTTCGTGATAAACCAGTGGCTCATACACTCTCTGTTCAAGACAATGTCCAGCATCATGTCTCTGCACGTCTTTGGAACTCTCTTCGGTGTGATGACATCGTGGGTGCTTTACCGTACAGAGAACATGCCGAAGCACGAGAAAGAGAAGTTTGACAGTAAATCTGGATTATTTGCCATGTTCGggacTTTGTTCCTGTGGATGTTCTGGCCTAGTTTTAACTCTGCGCTGGTAAAGTACAAAATCATAGCATATGGCACATATCTGTCCTTGGCAGTCAGCACTGTGACAGCGATGGCTGTCTCCGCACTGTCCAGCCCCACAGGGAAAATGAACTTGGTACATATTCAGGGCTCCATCCTGGCTGGTGGTGTGGCTACTGGGATTGCAGTGACGGCTGTCCCTTGGATGGACATGACCATTGGCTTTTGTGCTGCTCTTCTGGCAACGCTGGGATTCCGATATTTAAAGGGACATATGCTGCATGCTTTTGAGATCCATGACACCCGCGGGGTCCTGAATGTGCACGCCATTCCGGGGATTCTGGGATATCTTGCGTATCTCCTAATACGACTGGTCAGACTTGAGGACACCACAGTtgctGTCCGGTTTGCAGTTAATCACATCTGTATTCTGCTCATCACCGTCAGTATGAGCCTGGTTTTGGGGATGTTCACAGGTTTTCTCATCAAATGGAGCTTCTGGAAGCCTCATCAGGACAGGAAGTGCTTTGATGATCAGGCATTTTGGGAGTTTCCACATTTAGCCGTGCGCAAATGAACGACGACTAAAGGAACACAGAGGAGAATTGGAGGAATTCCATTACAGCTTATGTTTGAGTTTTCTTTGTATGGAGTGTATAGTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302967 lncRNA upstream 23220 43273936 ~ 43277666 (+) True G223280
TU302969 lncRNA upstream 23220 43273936 ~ 43277666 (+) False G223280
TU302970 lncRNA upstream 23220 43273936 ~ 43277666 (+) False G223280
TU302963 lncRNA upstream 86725 43212390 ~ 43214161 (+) True G223276
TU302954 lncRNA upstream 97117 43196068 ~ 43203769 (+) True G223274
XR_002651994.1 lncRNA downstream 23183 43334132 ~ 43335060 (+) True LOC111196054
TU302993 lncRNA downstream 34698 43345647 ~ 43354563 (+) True G223296
TU302994 lncRNA downstream 34698 43345647 ~ 43353181 (+) False G223296
TU303140 lncRNA downstream 348565 43659514 ~ 43740309 (+) True G223349
TU303165 lncRNA downstream 412726 43723675 ~ 43768983 (+) False mcu
XM_022685170.1 mRNA upstream 107446 43189360 ~ 43193440 (+) True LOC103028407
XM_007238579.3 mRNA upstream 365051 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA upstream 365051 42908521 ~ 42935835 (+) False rab11fip2
XM_007238581.2 mRNA upstream 498601 42774245 ~ 42802285 (+) True fam204a
XM_007238585.3 mRNA upstream 578952 42711460 ~ 42721934 (+) True LOC103047539
XM_022685182.1 mRNA downstream 20568 43331517 ~ 43335981 (+) False LOC111196053
XM_022685184.1 mRNA downstream 20569 43331518 ~ 43335986 (+) True LOC111196053
XM_007238564.2 mRNA downstream 169470 43480419 ~ 43569433 (+) False LOC103041531
XM_022685185.1 mRNA downstream 169951 43480900 ~ 43569433 (+) False LOC103041531
XM_007238565.3 mRNA downstream 206207 43517156 ~ 43569433 (+) True LOC103041531
TU302940 other upstream 134752 43163281 ~ 43166134 (+) True G223269
TU302942 other upstream 135349 43164185 ~ 43165537 (+) False G223269
trnag-gcc_49 other upstream 598658 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 598827 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 599159 42701657 ~ 42701727 (+) True trnag-gcc_47
TU303125 other downstream 300674 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 369237 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 1585228 44896177 ~ 44899645 (+) False mcph1
TU303518 other downstream 1669489 44980438 ~ 44981140 (+) False polh
TU303660 other downstream 1936423 45247372 ~ 45258901 (+) False gng4

Expression Profile