RNA id: XM_022685234.1


Basic Information

Item Value
RNA id XM_022685234.1
length 711
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC111188191
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45384368 ~ 45386035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCTTCCCCTACCTACTCAGCGAGTTCTACGGCACGCTTGAACATGCTGCCCCGGAACTGCTGATGCATGAACGGTACGATGGGAAAAAGAGCGACGTGTGGAGTCTGGGCGTCGTTCTGTACTTCATGGTCATTGGACGTTTGCCCTTCAAATACGACAAACAAAAGGGCAAGGCTACCGTGCTCCGTTCACAGAGGAAAGGTGTGCAGTTTCCACAAGAGATGCCGATAGAGGAGCCTTGTAAGGAACTCATCACACGCATGCTGTGCTTCAATCCCAGAAAACGGTGTTCCATCGCAGAGGTACAGCAGGACCCTTGGCTGCAGTCGGTGCCAGAACAAGTTATAGACAGACCTGCTGAGACAGCTGATGAAGAAGAACGAAAAAGCAGTGTGAGTTCTCCAGACGTCACTGCAGTCGAGGCAGTAGAAGAGGAGCTCCCTGCTACAAGCTGCAGATGCGATTCAGAGCAGGAAGCTGTCGGCAGTAAAATTGGGGCGAGTCGGACTCACATTGGCGTAGAGGACGTCGGGGAGGAGGAGTCCGGCTGCATCGGCTGCTGCTGTTCAATTTTTACTGCAGTGAAAAGCGCAGCTAAGAAATATGTTGCGGCACCAATCCTTAAAACCACCCGGATCTTTCGAAGAAATATTAGGAAGATTCTTCCAATTAACCTCAAAGCATGACCTGAGGTATGTAAAAAGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303741 lncRNA upstream 18430 45365290 ~ 45365938 (+) True G223780
TU303647 lncRNA upstream 199421 45184710 ~ 45184947 (+) False LOC107197130
TU303562 lncRNA upstream 234858 45149266 ~ 45149510 (+) True G223647
TU303559 lncRNA upstream 242684 45141449 ~ 45141684 (+) True G223644
TU303558 lncRNA upstream 245167 45138344 ~ 45139201 (+) True G223643
TU303788 lncRNA downstream 40145 45426180 ~ 45428067 (+) True G223802
TU303789 lncRNA downstream 42454 45428489 ~ 45429041 (+) True G223803
TU303790 lncRNA downstream 44644 45430679 ~ 45437007 (+) True G223804
TU303791 lncRNA downstream 44644 45430679 ~ 45431616 (+) False G223804
TU303792 lncRNA downstream 48473 45434508 ~ 45439947 (+) False G223804
XM_007238522.3 mRNA upstream 22422 45358709 ~ 45361946 (+) True LOC103028822
XM_007238523.2 mRNA upstream 44797 45336335 ~ 45339571 (+) True LOC103029137
XM_022684780.1 mRNA upstream 51087 45293002 ~ 45333281 (+) True arid4b
XM_007238528.3 mRNA upstream 106603 45265932 ~ 45277765 (+) True b3galnt2
XM_007238529.3 mRNA upstream 125444 45247370 ~ 45258924 (+) True gng4
XM_022685240.1 mRNA downstream 26408 45412443 ~ 45425499 (+) True mlh1
XM_022685241.1 mRNA downstream 26410 45412445 ~ 45425499 (+) False mlh1
XM_007238514.3 mRNA downstream 84677 45470712 ~ 45473381 (+) True mrpl14
XM_022685257.1 mRNA downstream 128001 45514036 ~ 45517930 (+) True LOC103024737
XM_007238512.3 mRNA downstream 178044 45564079 ~ 45568152 (+) True mgme1
TU303669 other upstream 71022 45293010 ~ 45313346 (+) False arid4b
TU303660 other upstream 125467 45247372 ~ 45258901 (+) False gng4
TU303518 other upstream 403228 44980438 ~ 44981140 (+) False polh
TU303483 other upstream 484723 44896177 ~ 44899645 (+) False mcph1
TU303156 other upstream 1631882 43680186 ~ 43752486 (+) False mcu
TU303772 other downstream 11661 45397696 ~ 45402815 (+) True G223798
TU303777 other downstream 11795 45397830 ~ 45402815 (+) False G223798
TU303778 other downstream 11795 45397830 ~ 45402815 (+) False G223798
TU303861 other downstream 138363 45524398 ~ 45532148 (+) True G223850

Expression Profile