RNA id: XR_002651891.1


Basic Information

Item Value
RNA id XR_002651891.1
length 479
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC111195955
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6218386 ~ 6235720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATATTTTgcattaatacaataaatacattatacgCATGCCTTAAATAacaaattgtgatttttttttgcgtgTCTGGGGAATCTGATATATTCTTATCCGTGTTTTATCTCCTGCCCTTGCTGCTCTGCACTGGCAGAAGGCGTTGTATCCTTTCAGTTGGAGTCGCGTTTCTATGCGTTATGAGCAGGCTTCGGGCTGAGAGACTGCTGTGCTGCACCACTCTAAACCACTATTGCCTATTTTATGGACTGAAAGCTGCAAGTTTAAAATCTTCTCTTGTAATAAGGCCCTAGTCCCCTGGACCCTCATGGACCCAGCAGGCAGATGTCTGGATCTTCAGTTTTACCCAgGGAGTCCAAACCTGGGCATACAGAATGATGAACGACTTTGAGCACTCCTCGCTCAGCAATGCTGTTCTCTCTGCCTCTACACCCATTAGCTCCACAGCTTCTCAGctggttCCTGGTTTTTAAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290632 lncRNA upstream 105376 6112603 ~ 6113010 (+) True G214134
XR_002651903.1 lncRNA upstream 130789 6086759 ~ 6087597 (+) True LOC111195966
TU290624 lncRNA upstream 131885 6086241 ~ 6086501 (+) True G214126
TU290623 lncRNA upstream 148632 6069424 ~ 6069754 (+) True G214125
TU290612 lncRNA upstream 181181 6035494 ~ 6037205 (+) True G214121
TU290692 lncRNA downstream 39994 6275714 ~ 6275923 (+) True G214174
TU290742 lncRNA downstream 145224 6380944 ~ 6473744 (+) True G214215
TU290760 lncRNA downstream 233753 6469473 ~ 6470200 (+) True G214227
TU290835 lncRNA downstream 345574 6581294 ~ 6581733 (+) True G214283
TU290842 lncRNA downstream 396345 6632065 ~ 6632374 (+) True G214290
XM_022684419.1 mRNA upstream 34210 6180250 ~ 6184176 (+) True LOC111195932
XM_022685040.1 mRNA upstream 58741 6150688 ~ 6159645 (+) False LOC103039918
XM_022685039.1 mRNA upstream 58742 6150688 ~ 6159644 (+) True LOC103039918
XM_022684418.1 mRNA upstream 108120 6104774 ~ 6110266 (+) True LOC111195931
XM_007241205.3 mRNA upstream 514537 5689706 ~ 5703849 (+) True lrpap1
XM_007229489.3 mRNA downstream 57390 6293110 ~ 6299551 (+) True LOC103039606
XM_007229487.3 mRNA downstream 66996 6302716 ~ 6312607 (+) True LOC103039100
XM_007229486.3 mRNA downstream 79132 6314852 ~ 6324230 (+) True LOC103038786
XM_015604677.2 mRNA downstream 79132 6314852 ~ 6324230 (+) False LOC103038786
XM_022684506.1 mRNA downstream 151784 6387504 ~ 6398481 (+) True LOC103036975
TU290451 other upstream 696711 5521184 ~ 5521675 (+) True G214006
TU290305 other upstream 1044290 5173069 ~ 5174096 (+) True G213891
TU290072 other upstream 1789424 4398585 ~ 4428962 (+) True G213715
TU290045 other upstream 1855221 4344850 ~ 4363165 (+) False inpp4b
TU290693 other downstream 48061 6283781 ~ 6284368 (+) True G214175
trnak-cuu_9 other downstream 90265 6325985 ~ 6326057 (+) True trnak-cuu_9
TU290727 other downstream 163356 6399076 ~ 6409068 (+) True LOC111196031
trnam-cau_43 other downstream 245838 6481558 ~ 6481629 (+) True trnam-cau_43
TU291318 other downstream 1575273 7810993 ~ 7813032 (+) False pold4

Expression Profile