RNA id: XR_002651975.1


Basic Information

Item Value
RNA id XR_002651975.1
length 4527
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC111196026
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30851722 ~ 30861583 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgcgtagtTACGGGACTGTTCTactgactgtgtgtgttctggtttaggaaaaagaaaaatatgaacaaaaaacaTCAACTAAGATCTTGCTTTACTAATCACTTAATTCACCGCTGTtgtgattaatttaatttttattttttttttttactactgcaGACGTGCCTATAAGCGAACGCTATTATCTCTGTGCCTTTGCTCAGAGAGCGAGTGTATcagtattatatttaaatgtggaACTGTGGAGACATGCACTTCCCTGTTGTTGCTCCTACGCAGGAATTATGTGACTAGTAAAGCCTCccctctatgtgtgtgtgtgtgtgtgtgtgtccgtacATAAACGTGTGCTTGTCAATTATCATGTCCGTCATACTGTATCCAAGCAACGCATGGGTCCACTTGGGATGAATgcaaccatgttttttttttccttttttttattttcttatattatttttttgttattgctaGTTTTACAGATGAAAGACAAGTATTATTTGTGCCTTAACTTGTATGTTGATGATTCTTCTTATTTTGGGTGAATTTGGTTCTACAGATATACTGTATGCCTCCTGTCCACTCTTTGTCTTAAATTTGATCTGTTGATCTTGGGATTTGTGAATTCTTGATTGATCTAACCTGTGTTGTTGGTGATATGATTGCAATCCAAGCAGGTGCAGTGACAACAAAAGTACGAAGGCACGAAATGCGGGTCCATCCTTACCAAAGGGTAATGACCACAGACAGAGCCACCACCGGCAACTAACAATCTGACCTTCTGACCTCTCAACTTCACCCAATGATGACCTGCCCATTACCTGCCTGCAGATCACTTCTCtcaacttctctctctctctaaacatAATAAATGATGAACAAAACGCACACAAGAGTGTGTTTAAACAGCCTTCACTTGACAGCAGAGTGGCGGAGTGGAGAAGTGGCTTTCCTGCAGCCGAGTCGACGTACGTATGGACGCAGGCCAGTGGCTGGAACAGAAGACGTCCACGCCAGTTGGTACGAATGGTCTGCTCCAAAAGTGGACCACCTGCCCCTGCAGATCTGCACTCAGTCATTTGTAAAAGCAATAAGCAATAACGCCCAATTAGCCCAATCTTCTCCACAACGGCAGACTGACTTCTCCACTCAACGAAGGCTTCACACTCCAACCTACAGCCccaaatactgtatactgaCCTCCAGACCCAGCCTTCCGTCACGGGAAAAGCATACACCTCCCGCATTGCCCGTCTGTTGGTAACAGCTCTATCTATCTGAATGTATGATATGATGTGTGATATGATGGTGTGGCCTCAGTGCATGCACCATACAGTCGGCTCCTCCTAGTACATGACAGAACTCAGCTGATACATCAACTTTAAATTTGGGGAAGGTAAGACAGAAGTCGTAGCGTCAAAACAGCAAGGGACACGTGTCAAAAAACAAGCATttccccccccctcccctctcctCCAAAACAATCGGACACTATTCAGTGGACGAGTTTCTCTGAGGATGTATAAGCCATGCTTGCCTATCTGCTGTACAAAATGTATGAAatttgtagataaaaaaaatgtttaaaaagaaaaaaacagaatccGCGAGACAAAGAACACGTGTACAGAAAAGAAACCTTTTATTATCCTCCTCTGCAGTGGAACAAACAGAACATAtctatatttttacaattacaGACTTTTATACTCGCAAGTATTGTCAagggaaagacaaaaaaagaaaaaaataataataataaaaaactaaaacagatcAAACCGAAACCCTTTATGAAGTGAAAACAATCCAGTTTTCTGTAATTGGATGTAGAAACGGATGACCAAAACAGCCCTCTCCTCTTGTCGACGGAGGGTTGAAATGGAAACATTACAAAAGTGCCTTATCGTGGTTCTCTTCGATCTGAATGTGTCATCATTAGTGGCGAATGAGCAGACCAGAGCTCAGTGCACGCAGCTTTCTCTGAGTGCAGGAAGATGCCATCAGCCTTCCGTGCTCATCTTATATTTCCCCTTCAGTTTAAGCAGCTGATTTGATGGCTGGATTTAAATTCTAAATCTGAATCCTTAAACTTGCTTAAAAAGGCTTGTAGTCTTCAGTAACATCAGTAACTACTGTGAATTTTCCAGTTACTGCAGGAAAAccctttttatttcaattttacgTTGAGTATGTAAGATGTGAATGGGCTAACCTATAGGCGTTCAGTGTTTAGGAAGTTTTTAGACTGTTCAATTTTGTATAAATTCACCCTAAATTTACcctcaaatattttaaagtttggAATCAGAGGCCCGTTAAGAAATTTCTTAGAAAGTCATTGGTAAAACAGGCGATTCAGTCAGAAGCCTAGAATGAACATACTGTGTTCAATAacgtaataaaatatatacaataaaatgtgtttgtaatctaaagaaaaaaaacgtataaaaaCTTATATGAACTTgtgaaaatatatgaaatattagTTGTACCAGTATGATGAACTGGACACATATCCAGACAATATTGAGTTTCCAAAGTGGTCAAAAGTGTGAGAAtgattgttatattattttatcatttatagttttataataGCTCTTTTTAGAGCAATAATAGCCATTTTACACAATACACttattgaaataaaatgttttacatactGTATGAAAATAGGttcttttgtccttttttggtGCTACAGACAACCATTCATAACctctaaatgttttttagtTATAGAaaatttaaccagacaaaaaataatcataaatgtGCGATCCTAAGACCCCAAACTTTTTCTTTgggtgcatttttaatttatccTATATATTTGGGATTAGCaaacatttttgcaaaaatCAATTTCATCATATGGGGAAGTAagtgtctggactggctgtagaaacttttgactgggattcccattATCGTGTTTTTAATGAATTGAGTCTGTAAATGTCGTCCAAAATGTGACCACCAGATGTAATGGACAGTGTTTCCATATGGGGCCAAATGATCAATGTTTTAACAAATTGagtatcatggtgcagagaatcagaaatgtaatatatgatatatgatatatgataaatGTCCATATATGAGtatgcagggtctcaagaggttatAGAACAATTCGAAAGAACTAAAGAACTATCCCATTAGTAATTATAAcatgtgtttaaaatgtatgaaatgtatgttttttatcaGGTTTAAGCATATTATCATTGTCACACAAAAATCTCAtccaaaagaataaaaaaaaaatattggcttTAATTAGAAGttattgtaaaattaatttattttgtgaaaCATTTGAGTCGATgcatttattgtgattttttttttataaaactcccaatttcaaaaagtttaaaaacatcaaatattATAAAAGTTATTATAGAAGAACACAATGTGACTTTTTAGTGTGAAGCAGGAATAGCTTTGTGCCTAAAACCTTATGCTTTCTGATTGGGCTTAAACACTCAgctcaatatttaatatattacaaCTGTGAACTGAATAAACTGTACAGTATTAGTCTCAGTGCTCAGTGCAGCCTAACATCGACAGACTGCACCGcatttaacagcatttaacagaGTTACGTGGGGGGGTTTATTATGATGGattgcattaaaatacattaaataaaggttggaatataatgaactgtaagagagaaagaaagctgcGTACACTGCCCAGCCTGGTCTGCACCATATTACTGTGTTGTGTGTCCCCCTAGACCCCGCCCCCAAATCTTACTTTACTATGCAACAGAATGGCCTCTGACGTCTTGTGGGGAGCATATGTGTGTGTCAATCAGACATGTCTTCCTGTACCGTCCTCACGTCtctccaccaacaccaccaccaccaccactactactattactactacttttcAGTACGGATTCTGCAGTGCCATGACAGTATTGTTGTCATCATGAAGGTATTAGAATTGATAgtcttttgaaataaaataagatgaaattaaaaatgaaatgacaTGAAAATCGCctgtttgccaaaaaaaaaaaatgctgttttttttgtgtagattATAAGATAAACCAAtttgagaaacagatttttttttctaaagagaATAAATGTTATTAGATGATCAACATCACAGGTTATTGATCTGCCCACGAGCGAAGAGTACCATATTTGACATCGCATGATACTTTACTCCCCTTTGATAGCAAATAGTCCCAATCTGGTTTCTTTTTTGGTTTTAATGAAatgagttttagtttttattccAGAATTAGTGAGAATTGATCAATGTGAATGTTCTTCATGATTGGAGTGAATAAGTAAGTGTGTTACAGACCTACAGACTGAAGTTTCTCTGTGTTAGATCCATGATGTGTGCGCCCCATACCCAAGTATTGCCTATGAGAAAATACGTATGTCTGTATCAACAGCCATTGTTACAAGtttataccgtatttttctatcttattttttatgtatgtaataAACTACATTAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299040 lncRNA upstream 663715 30186222 ~ 30188007 (+) True G220407
TU299019 lncRNA upstream 691930 30102451 ~ 30159792 (+) True G220392
TU299021 lncRNA upstream 691930 30106425 ~ 30159792 (+) False G220392
TU299014 lncRNA upstream 768105 30083149 ~ 30083617 (+) True G220388
TU299002 lncRNA upstream 786946 30003651 ~ 30064776 (+) True G220377
TU299272 lncRNA downstream 34545 30896128 ~ 30900415 (+) True G220605
TU299300 lncRNA downstream 260666 31122249 ~ 31176810 (+) False G220624
TU299306 lncRNA downstream 293547 31155130 ~ 31161593 (+) True G220629
TU299323 lncRNA downstream 310592 31172175 ~ 31175036 (+) False G220640
TU299319 lncRNA downstream 311344 31172927 ~ 31175036 (+) False G220640
XM_022684982.1 mRNA upstream 337 30645356 ~ 30851385 (+) True LOC103026410
XM_022684980.1 mRNA upstream 383756 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA upstream 383756 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA upstream 383756 30450058 ~ 30467966 (+) True LOC103027087
XM_007247398.3 mRNA upstream 697749 30149433 ~ 30153973 (+) True LOC103028857
XM_022684984.1 mRNA downstream 62829 30924412 ~ 30942786 (+) True LOC103025585
XM_007247383.3 mRNA downstream 99937 30961520 ~ 30970650 (+) True yipf3
XM_022684985.1 mRNA downstream 99937 30961520 ~ 30970650 (+) False yipf3
XM_022684986.1 mRNA downstream 115820 30977403 ~ 30998498 (+) False lrrc73
XM_007247382.3 mRNA downstream 119225 30980808 ~ 30998498 (+) True lrrc73
TU298921 other upstream 1058226 29787939 ~ 29793496 (+) True G220336
TU298923 other upstream 1058226 29787939 ~ 29793496 (+) False G220336
TU298924 other upstream 1058226 29787939 ~ 29793496 (+) False G220336
TU298927 other upstream 1058226 29787939 ~ 29793496 (+) False G220336
TU298732 other upstream 1709704 29141367 ~ 29142018 (+) True G220194
TU299278 other downstream 87429 30949012 ~ 30951941 (+) True G220610
trnak-cuu_12 other downstream 531151 31392734 ~ 31392806 (+) True trnak-cuu_12
trnaa-agc_18 other downstream 542124 31403707 ~ 31403779 (+) True trnaa-agc_18
trnag-gcc_3 other downstream 553317 31414900 ~ 31414970 (+) True trnag-gcc_3
trnag-gcc_5 other downstream 561169 31422752 ~ 31422822 (+) True trnag-gcc_5

Expression Profile