RNA id: trnag-gcc_16


Basic Information

Item Value
RNA id trnag-gcc_16
length 70
RNA type tRNA
GC content 0.61
exon number 1
gene id trnag-gcc_16
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42411915 ~ 42411984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccgcCAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 40334 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 234628 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 362753 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 426091 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 896642 41506061 ~ 41515273 (+) True G223092
TU302842 lncRNA downstream 40865 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 77599 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 120126 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 217993 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 318613 42730597 ~ 42730923 (+) True G223218
XM_022685162.1 mRNA upstream 40438 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 40438 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 189861 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1117665 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 299476 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 362261 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 496521 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 496537 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 777376 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_15 other upstream 258 42411587 ~ 42411657 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 423 42411423 ~ 42411492 (+) True trnag-gcc_14
trnag-gcc_13 other upstream 838 42411008 ~ 42411077 (+) True trnag-gcc_13
trnag-gcc_12 other upstream 1002 42410843 ~ 42410913 (+) True trnag-gcc_12
trnag-gcc_11 other upstream 1167 42410679 ~ 42410748 (+) True trnag-gcc_11
trnag-gcc_17 other downstream 259 42412243 ~ 42412312 (+) True trnag-gcc_17
trnag-gcc_18 other downstream 423 42412407 ~ 42412476 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 738 42412722 ~ 42412792 (+) True trnag-gcc_19
trnag-gcc_20 other downstream 903 42412887 ~ 42412957 (+) True trnag-gcc_20
trnag-gcc_21 other downstream 1068 42413052 ~ 42413122 (+) True trnag-gcc_21