RNA id: trnag-gcc_19


Basic Information

Item Value
RNA id trnag-gcc_19
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_19
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42412722 ~ 42412792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 41141 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 235435 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 363560 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 426898 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 897449 41506061 ~ 41515273 (+) True G223092
TU302842 lncRNA downstream 40057 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 76791 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 119318 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 217185 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 317805 42730597 ~ 42730923 (+) True G223218
XM_022685162.1 mRNA upstream 41245 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 41245 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 190668 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1118472 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 298668 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 361453 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 495713 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 495729 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 776568 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_18 other upstream 246 42412407 ~ 42412476 (+) True trnag-gcc_18
trnag-gcc_17 other upstream 410 42412243 ~ 42412312 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 738 42411915 ~ 42411984 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 1065 42411587 ~ 42411657 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 1230 42411423 ~ 42411492 (+) True trnag-gcc_14
trnag-gcc_20 other downstream 95 42412887 ~ 42412957 (+) True trnag-gcc_20
trnag-gcc_21 other downstream 260 42413052 ~ 42413122 (+) True trnag-gcc_21
trnag-gcc_22 other downstream 425 42413217 ~ 42413286 (+) True trnag-gcc_22
trnag-gcc_23 other downstream 589 42413381 ~ 42413450 (+) True trnag-gcc_23
trnag-gcc_24 other downstream 755 42413547 ~ 42413617 (+) True trnag-gcc_24