RNA id: trnag-gcc_3


Basic Information

Item Value
RNA id trnag-gcc_3
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_3
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31414900 ~ 31414970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299428 lncRNA upstream 72193 31339891 ~ 31342707 (+) True G220702
TU299425 lncRNA upstream 80357 31334255 ~ 31334543 (+) True G220700
TU299416 lncRNA upstream 84718 31324844 ~ 31330182 (+) True G220694
TU299413 lncRNA upstream 106021 31306769 ~ 31308879 (+) True G220692
TU299299 lncRNA upstream 238220 31175384 ~ 31176680 (+) True G220624
TU299498 lncRNA downstream 101160 31516130 ~ 31520497 (+) True G220750
TU299546 lncRNA downstream 132770 31547740 ~ 31548009 (+) True G220781
TU299553 lncRNA downstream 188088 31603058 ~ 31603325 (+) True G220788
TU299564 lncRNA downstream 235943 31650913 ~ 31651924 (+) True G220795
TU299575 lncRNA downstream 330660 31745630 ~ 31746889 (+) True G220802
XM_007247376.3 mRNA upstream 116644 31294181 ~ 31298256 (+) True mea1
XM_015605347.2 mRNA upstream 132076 31244160 ~ 31282824 (+) False dlk2
XM_015605346.2 mRNA upstream 132076 31253713 ~ 31282824 (+) True dlk2
XM_015605348.2 mRNA upstream 132076 31253854 ~ 31282824 (+) False dlk2
XM_007247382.3 mRNA upstream 416402 30980808 ~ 30998498 (+) True lrrc73
XM_007247342.3 mRNA downstream 15310 31430280 ~ 31436529 (+) True mrps6
XM_022684463.1 mRNA downstream 28061 31443031 ~ 31455830 (+) True psap
XM_007247347.3 mRNA downstream 107315 31522285 ~ 31525343 (+) True c1d
XM_007238455.3 mRNA downstream 869607 32284577 ~ 32288850 (+) True map10
XM_007238454.3 mRNA downstream 874882 32289852 ~ 32296881 (+) True ntpcr
trnaa-agc_18 other upstream 11121 31403707 ~ 31403779 (+) True trnaa-agc_18
trnak-cuu_12 other upstream 22094 31392734 ~ 31392806 (+) True trnak-cuu_12
TU299278 other upstream 462959 30949012 ~ 30951941 (+) True G220610
TU298923 other upstream 1621404 29787939 ~ 29793496 (+) False G220336
trnag-gcc_5 other downstream 7782 31422752 ~ 31422822 (+) True trnag-gcc_5
trnak-cuu_13 other downstream 13270 31428240 ~ 31428312 (+) True trnak-cuu_13
TU299570 other downstream 321927 31736897 ~ 31738196 (+) True G220800
TU299723 other downstream 1120086 32535056 ~ 32578552 (+) False LOC103027057
XR_002651979.1 other downstream 1198504 32613474 ~ 32677285 (+) False LOC103038412