RNA id: trnag-gcc_42


Basic Information

Item Value
RNA id trnag-gcc_42
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_42
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42418104 ~ 42418174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 46523 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 240817 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 368942 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 432280 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 902831 41506061 ~ 41515273 (+) True G223092
TU302842 lncRNA downstream 34675 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 71409 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 113936 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 211803 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 312423 42730597 ~ 42730923 (+) True G223218
XM_022685162.1 mRNA upstream 46627 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 46627 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 196050 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1123854 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 293286 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 356071 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 490331 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 490347 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 771186 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_41 other upstream 95 42417939 ~ 42418009 (+) True trnag-gcc_41
trnag-gcc_40 other upstream 260 42417774 ~ 42417844 (+) True trnag-gcc_40
trnag-gcc_39 other upstream 425 42417609 ~ 42417679 (+) True trnag-gcc_39
trnag-gcc_38 other upstream 749 42417285 ~ 42417355 (+) True trnag-gcc_38
trnag-gcc_37 other upstream 915 42417119 ~ 42417189 (+) True trnag-gcc_37
trnag-gcc_43 other downstream 95 42418269 ~ 42418339 (+) True trnag-gcc_43
trnag-gcc_44 other downstream 260 42418434 ~ 42418504 (+) True trnag-gcc_44
trnag-gcc_45 other downstream 425 42418599 ~ 42418669 (+) True trnag-gcc_45
trnag-gcc_46 other downstream 45125 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_47 other downstream 283483 42701657 ~ 42701727 (+) True trnag-gcc_47