RNA id: trnag-gcc_45



Basic Information


Item Value
RNA id trnag-gcc_45
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_45
representative True

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42418599 ~ 42418669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 47018 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 241312 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 369437 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 432775 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 903326 41506061 ~ 41515273 (+) True G223092
TU302842 lncRNA downstream 34180 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 70914 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 113441 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 211308 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 311928 42730597 ~ 42730923 (+) True G223218
XM_022685162.1 mRNA upstream 47122 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 47122 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 196545 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1124349 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 292791 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 355576 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 489836 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 489852 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 770691 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_44 other upstream 95 42418434 ~ 42418504 (+) True trnag-gcc_44
trnag-gcc_43 other upstream 260 42418269 ~ 42418339 (+) True trnag-gcc_43
trnag-gcc_42 other upstream 425 42418104 ~ 42418174 (+) True trnag-gcc_42
trnag-gcc_41 other upstream 590 42417939 ~ 42418009 (+) True trnag-gcc_41
trnag-gcc_40 other upstream 755 42417774 ~ 42417844 (+) True trnag-gcc_40
trnag-gcc_46 other downstream 44630 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_47 other downstream 282988 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_48 other downstream 283320 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_49 other downstream 283489 42702158 ~ 42702228 (+) True trnag-gcc_49
TU302940 other downstream 744612 43163281 ~ 43166134 (+) True G223269