RNA id: trnag-gcc_48


Basic Information

Item Value
RNA id trnag-gcc_48
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_48
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42701989 ~ 42702059 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTTGAATTCTCGCCTGCCACGCGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302857 lncRNA upstream 71726 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 169567 42532110 ~ 42532422 (+) True G223201
TU302848 lncRNA upstream 212114 42489583 ~ 42489875 (+) True G223198
TU302842 lncRNA upstream 248752 42452849 ~ 42453237 (+) True G223192
TU302792 lncRNA upstream 330408 42342841 ~ 42371581 (+) False gfra1
TU302871 lncRNA downstream 28538 42730597 ~ 42730923 (+) True G223218
TU302903 lncRNA downstream 237148 42939207 ~ 42941673 (+) True G223241
TU302907 lncRNA downstream 311930 43013989 ~ 43014235 (+) True G223245
TU302954 lncRNA downstream 494009 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 494009 43196068 ~ 43203769 (+) False G223274
XM_022685162.1 mRNA upstream 330512 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 330512 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 479935 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1407739 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 9401 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 72186 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 206446 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 206462 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 487301 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_47 other upstream 262 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_46 other upstream 238620 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_45 other upstream 283320 42418599 ~ 42418669 (+) True trnag-gcc_45
trnag-gcc_44 other upstream 283485 42418434 ~ 42418504 (+) True trnag-gcc_44
trnag-gcc_43 other upstream 283650 42418269 ~ 42418339 (+) True trnag-gcc_43
trnag-gcc_49 other downstream 99 42702158 ~ 42702228 (+) True trnag-gcc_49
TU302940 other downstream 461222 43163281 ~ 43166134 (+) True G223269
TU302942 other downstream 462126 43164185 ~ 43165537 (+) False G223269
TU303125 other downstream 909564 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 978127 43680186 ~ 43752486 (+) False mcu