RNA id: trnag-gcc_8


Basic Information

Item Value
RNA id trnag-gcc_8
length 70
RNA type tRNA
GC content 0.61
exon number 1
gene id trnag-gcc_8
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42410186 ~ 42410255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCGGCCAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 38605 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 232899 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 361024 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 424362 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 894913 41506061 ~ 41515273 (+) True G223092
TU302842 lncRNA downstream 42594 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 79328 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 121855 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 219722 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 320342 42730597 ~ 42730923 (+) True G223218
XM_022685162.1 mRNA upstream 38709 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 38709 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 188132 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1115936 41287961 ~ 41294250 (+) True LOC103042542
XM_007238585.3 mRNA downstream 301205 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 363990 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 498250 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 498266 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 779105 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_7 other upstream 95 42410021 ~ 42410091 (+) True trnag-gcc_7
XR_002651928.1 other upstream 1219307 41189350 ~ 41190879 (+) False LOC103046574
TU302648 other upstream 1336870 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other upstream 1336870 41065669 ~ 41073316 (+) False LOC103045954
TU302651 other upstream 1336870 41065669 ~ 41073316 (+) False LOC103045954
trnag-gcc_9 other downstream 95 42410350 ~ 42410419 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 259 42410514 ~ 42410584 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 424 42410679 ~ 42410748 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 588 42410843 ~ 42410913 (+) True trnag-gcc_12
trnag-gcc_13 other downstream 753 42411008 ~ 42411077 (+) True trnag-gcc_13

Expression Profile