RNA id: trnat-ugu_90


Basic Information

Item Value
RNA id trnat-ugu_90
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnat-ugu_90
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13347561 ~ 13347633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAAATCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293297 lncRNA upstream 35074 13309303 ~ 13312487 (+) True LOC103038358
TU293294 lncRNA upstream 45514 13301385 ~ 13302047 (+) True G216100
TU293237 lncRNA upstream 109708 13235914 ~ 13237853 (+) True G216073
TU293340 lncRNA downstream 118077 13465710 ~ 13471415 (+) True G216138
TU293343 lncRNA downstream 125746 13473379 ~ 13474113 (+) True G216139
TU293345 lncRNA downstream 127503 13475136 ~ 13475336 (+) True G216141
TU293347 lncRNA downstream 132111 13479744 ~ 13480026 (+) True G216143
TU293350 lncRNA downstream 132873 13480506 ~ 13484360 (+) True LOC103033819
XM_022684430.1 mRNA upstream 35118 13308037 ~ 13312443 (+) False LOC103038358
XM_015605668.2 mRNA upstream 48542 13271416 ~ 13299019 (+) True frmd6
XM_007248539.3 mRNA upstream 144366 13197150 ~ 13203195 (+) True tmx1
XM_007248527.3 mRNA upstream 279333 13051867 ~ 13068228 (+) True atl1
XM_022684646.1 mRNA upstream 367994 12973611 ~ 12979567 (+) True atp5s
XM_022684651.1 mRNA downstream 34240 13381873 ~ 13393037 (+) True abcb10
XM_007248551.3 mRNA downstream 50148 13397781 ~ 13401639 (+) True LOC103031709
XM_007248552.2 mRNA downstream 55975 13403608 ~ 13409451 (+) False LOC103032026
XM_007248553.3 mRNA downstream 56172 13403805 ~ 13409451 (+) True LOC103032026
XM_007248557.3 mRNA downstream 114696 13462329 ~ 13464974 (+) True pdcd2
trnay-gua_11 other upstream 31399 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 32361 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 243519 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 631656 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 1141397 12205501 ~ 12206164 (+) True G215834
TU294489 other downstream 3656962 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3819385 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 4964273 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 5395600 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 5489729 18837362 ~ 18847028 (+) False cxcl12

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnat-ugu True 73 mRNA 0.51 1 NC_048566.1 14408666 ~ 14408738 (+)
rainbow trout (Oncorhynchus mykiss) trnat-ugu-39 True 73 mRNA 0.58 1 NC_048583.1 1579545 ~ 1579617 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_106 True 72 tRNA 0.56 1 NC_053113.1 43527854 ~ 43527925 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1424 True 73 tRNA 0.58 1 NC_053134.1 1197556 ~ 1197628 (+)
striped catfish (Pangasianodon hypophthalmus) trnat-ugu True 73 tRNA 0.58 1 NC_047597.1 12667814 ~ 12667886 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1424 True 73 tRNA 0.60 1 NC_056707.1 5441891 ~ 5441963 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_106 True 73 tRNA 0.61 1 NC_056699.1 21884118 ~ 21884190 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu True 73 tRNA 0.56 1 NC_035899.1 6650705 ~ 6650777 (+)