RNA id: TU100015


Basic Information

Item Value
RNA id TU100015
length 466
lncRNA type intronic
GC content 0.53
exon number 2
gene id G74205
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16286228 ~ 16292019 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccctttcctctctcGAGAGAGTCTGCTGGAGATAGAGCTGTGTgctctctcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagccgCGAGGCACGCGGTTTTGCTCACCTAGTCTCTCTCCCGCTGTTCCTCCCCTCTGTGGTGGAACAGCATTTAATCCAAAAGCacctcagttcagtttgttttctttggaagccattttgtttagttaatccttCACCTCATCTCATAAGAGGTAGCCGTAGCTTCCACGGCGAGCCTTGTTTACAATTCTCcccttctctttcactcacgctaGGCGTGAGGTTTtgttttccgcccgttttcactctccgcccgttttcgtggctccgcccctttcggcggaggctCTTTAAAAGGCGATTAAAGCGGCCGCatcccaatccgctcgctggtgcagcagttagagcactgggctgcgaccgcgacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100012 lncRNA downstream 33476 16252492 ~ 16252752 (-) True G74203
TU100011 lncRNA downstream 63955 16219096 ~ 16222273 (-) True G74202
TU100007 lncRNA downstream 70703 16202524 ~ 16215525 (-) True G74199
TU99883 lncRNA downstream 177503 16103616 ~ 16108725 (-) True G74091
TU99834 lncRNA downstream 332415 15853302 ~ 15953813 (-) True LOC111193099
TU100025 lncRNA upstream 24926 16316945 ~ 16321653 (-) True G74211
TU100056 lncRNA upstream 175584 16467603 ~ 16470323 (-) False LOC103041134
TU100092 lncRNA upstream 215985 16508004 ~ 16508462 (-) True G74265
TU100116 lncRNA upstream 348823 16640842 ~ 16641656 (-) True G74285
TU100117 lncRNA upstream 367484 16659503 ~ 16690357 (-) True G74286
XM_007228253.3 mRNA downstream 200594 16063769 ~ 16085634 (-) True ca12
XM_007228254.2 mRNA downstream 200602 16055056 ~ 16085626 (-) False ca12
XM_022672195.1 mRNA downstream 234651 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA downstream 234654 16040065 ~ 16051574 (-) False man2c1
XM_007228248.3 mRNA downstream 259327 16014365 ~ 16026901 (-) True sema7a
XM_007228261.3 mRNA upstream 25865 16317884 ~ 16350164 (-) True tbc1d2b
XM_022672198.1 mRNA upstream 92530 16384549 ~ 16414345 (-) False cib2
XM_007228263.3 mRNA upstream 92530 16384549 ~ 16414345 (-) True cib2
XM_015605124.2 mRNA upstream 155477 16447496 ~ 16457754 (-) True acsbg1
XM_022672200.1 mRNA upstream 156808 16448827 ~ 16457754 (-) False acsbg1
XR_002650248.1 other downstream 507805 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1740790 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3664872 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3721262 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1585007 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1690728 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2647155 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2778919 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3567675 19859694 ~ 19865982 (-) True G75100

Expression Profile