RNA id: TU100025


Basic Information

Item Value
RNA id TU100025
length 807
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G74211
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16316945 ~ 16321653 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttaaacattttttttttttcttacaaatcAGTATTAACATCCACATCAGTGTATTGGCtttatgtgtttgtatgtgtgtatgtatgtacgcATTCAGGTACCTTCATACTGTATCATGCAGGGCATGCAGTTCTGGTACACCAGCATTGCATGTTGTTTATTCCAAATAAGCAGATATGGTTTACTGCAAATTCTTGTATACATGGTTCAGAATATGTTTAATGTGCCTTGTTTACTTTTTATACGGAATGGCTAAAATAGCACTGTGTATTAAGTTGAATGAATAATGTTGTACTTGTGAAATATTTCAGGTTTTGCTCATGCAAATATCATATCCTTCATTCATCTGTCCCTGTTTCTGTATTCTGAGGCACTTATATCACTTTAGATTAGGGACCTACTCTCTTGGGACATATTTTACTTTAGGGAAGCTCACGATGCTACAGTATGTAAAACAAGTGGAGCAGTCAGGACTCCTGTCCTCGTGCACATGAAGTGTCTGAATGAAGAAAAGTCCTGTCTTCAGTAATGAGGTGGCACTTAGCTGCTGGAAACAAATATTGGACAATGCATATCATGCAGTCTGTCAGACCCAGCTGCTTATTTTCTGCTTGAGTGGCATTCCTTTGTTAGCGATCTGCTGCATTTGGACTAGTTTGAGTCCTCGAGTGTCAGGATTCCACCATTATATCCACTGCTGTTGGTGCCATGTGTGTTATCAGCGTGACACCCTGACATAGCTTTCTATCAGGACGATTAAGATAATTAACAGTTGTGGCCTAGAATTTCAGTTTATTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100015 lncRNA downstream 24926 16286228 ~ 16292019 (-) True G74205
TU100012 lncRNA downstream 64193 16252492 ~ 16252752 (-) True G74203
TU100011 lncRNA downstream 94672 16219096 ~ 16222273 (-) True G74202
TU100007 lncRNA downstream 101420 16202524 ~ 16215525 (-) True G74199
TU99883 lncRNA downstream 208220 16103616 ~ 16108725 (-) True G74091
TU100056 lncRNA upstream 145950 16467603 ~ 16470323 (-) False LOC103041134
TU100092 lncRNA upstream 186351 16508004 ~ 16508462 (-) True G74265
TU100116 lncRNA upstream 319189 16640842 ~ 16641656 (-) True G74285
TU100117 lncRNA upstream 337850 16659503 ~ 16690357 (-) True G74286
TU100126 lncRNA upstream 421407 16743060 ~ 16747522 (-) True G74295
XM_015601364.2 mRNA downstream 3620 16261965 ~ 16313325 (-) False dapk2
XM_007228260.3 mRNA downstream 3637 16257338 ~ 16313308 (-) True dapk2
XM_007228253.3 mRNA downstream 231311 16063769 ~ 16085634 (-) True ca12
XM_007228254.2 mRNA downstream 231319 16055056 ~ 16085626 (-) False ca12
XM_022672195.1 mRNA downstream 265368 16040065 ~ 16051577 (-) True man2c1
XM_022672198.1 mRNA upstream 62896 16384549 ~ 16414345 (-) False cib2
XM_007228263.3 mRNA upstream 62896 16384549 ~ 16414345 (-) True cib2
XM_015605124.2 mRNA upstream 125843 16447496 ~ 16457754 (-) True acsbg1
XM_022672200.1 mRNA upstream 127174 16448827 ~ 16457754 (-) False acsbg1
XM_007246480.3 mRNA upstream 145436 16467089 ~ 16470305 (-) True LOC103041134
XR_002650248.1 other downstream 538522 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1771507 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3695589 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3751979 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1555373 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1661094 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2617521 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2749285 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3538041 19859694 ~ 19865982 (-) True G75100

Expression Profile