RNA id: TU100056


Basic Information

Item Value
RNA id TU100056
length 531
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC103041134
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16467089 ~ 16470323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAATGTGATGGGGAGTTTATGAAGCGCGCGTGTCAACCCGGAGCTAGCTCAGTGTGTTTCAGGTACCGAGGAGAGCAGACCGACACTCTACGCAGGAGAAAATCCCCCGGTTGTGAAAATGCCTCTGGCCATAGATCTGCTGAACCCCTCCTTTGATTTGGAGAGAAGACGACACAAGAAGAAGAGGCTTGTGCAGAGTCCAAATTCCTACTTCATGGATGTTAAGTGCCCAGGTTGTTATAAAATCACAACAGTCTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCGACAGTGCTCTGCCAGCCCACAGGAGGGAAAGCCAGGCTGACAGAGGGCTGTTCTTTCAGAAGAAAGCAACACTGAAGAGAATATTGGAAAATGGACTATTTAAGAAAGAAATTGTTCCAGTTTCTTTATCTTTTCATTGATTGCAATGAGTGATGTTGTGACTAAAGTAATTGCATTAAAGGTTATTTCTACCTTACCACTTTCTGAATAAAGGACTAGCATTACACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100025 lncRNA downstream 145950 16316945 ~ 16321653 (-) True G74211
TU100015 lncRNA downstream 175584 16286228 ~ 16292019 (-) True G74205
TU100012 lncRNA downstream 214851 16252492 ~ 16252752 (-) True G74203
TU100011 lncRNA downstream 245330 16219096 ~ 16222273 (-) True G74202
TU100007 lncRNA downstream 252078 16202524 ~ 16215525 (-) True G74199
TU100092 lncRNA upstream 37681 16508004 ~ 16508462 (-) True G74265
TU100116 lncRNA upstream 170519 16640842 ~ 16641656 (-) True G74285
TU100117 lncRNA upstream 189180 16659503 ~ 16690357 (-) True G74286
TU100126 lncRNA upstream 272737 16743060 ~ 16747522 (-) True G74295
TU100143 lncRNA upstream 300119 16770442 ~ 16786039 (-) True G74306
XM_015605124.2 mRNA downstream 9849 16447496 ~ 16457754 (-) True acsbg1
XM_022672200.1 mRNA downstream 9849 16448827 ~ 16457754 (-) False acsbg1
XM_022672198.1 mRNA downstream 53258 16384549 ~ 16414345 (-) False cib2
XM_007228263.3 mRNA downstream 53258 16384549 ~ 16414345 (-) True cib2
XM_007228261.3 mRNA downstream 117439 16317884 ~ 16350164 (-) True tbc1d2b
XM_022672203.1 mRNA upstream 19324 16489647 ~ 16528087 (-) False LOC103042575
XM_015605134.2 mRNA upstream 19324 16489647 ~ 16522741 (-) True LOC103042575
XM_022672204.1 mRNA upstream 19324 16489647 ~ 16512606 (-) False LOC103042575
XM_007246487.3 mRNA upstream 147828 16618151 ~ 16738665 (-) True otud7a
XM_007246489.3 mRNA upstream 344593 16814916 ~ 16829981 (-) True bnip2
XR_002650248.1 other downstream 689180 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1922165 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3846247 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3902637 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1406703 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1512424 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2468851 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2600615 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3389371 19859694 ~ 19865982 (-) True G75100

Expression Profile