RNA id: XM_007246480.3


Basic Information

Item Value
RNA id XM_007246480.3
length 1027
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC103041134
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16467089 ~ 16470323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATGAAGCGCGCGTGTCAACCCGGAGCTAGCTCAGTGTGTTTCAGGTACCGAGGAGAGCAGACCGACACTCTACGCAGGAGAAAATCCCCCGGTTGTGAAAATGCCTCTGGCCATAGATCTGCTGAACCCCTCCTTTGATTTGGAGAGAAGACGACACAAGAAGAAGAGGCTTGTGCAGAGTCCAAATTCCTACTTCATGGATGTTAAGTGCCCAGGTTGTTATAAAATCACAACAGTCTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCGACAGTGCTCTGCCAGCCCACAGGAGGGAAAGCCAGGCTGACAGAGGGCTGTTCTTTCAGAAGAAAGCAACACTGAAGAGAATATTGGAAAATGGACTATTTAAGAAAGAAATTGTTCCAGTTTCTTTATCTTTTCATTGATTGCAATGAGTGATGTTGTGACTAAAGTAATTGCATTAAAGGTTATTTCTACCTTACCACTTTCTGAATAAAGGACTAGCATTACACCTCTTTGGAAtgcctttattaatttaaccaTATGTGTGTCTTTCCAAATCTGGCTATGTTTTAGGTAGATATCTTTGCTTTGTATAAGAAGCATCATTTATGTCATTCATACTATTTGTAGTGCTGGTCAGTGACACTTTCGAGACCAACATAATGTCACAACAGGAAAGAGCAAGATGAAACTTAAAATCTCCTTTGATATTATGCTGACACTTTAAACTGCATATTTTTTCAATGGAAATACTTATTCaaaaatttttataattcaaattttAGCCATGCTATCTAACTTCTTTCTGAACAAACTTCTTCCTGATTAAGAAATGCTGCATACTGGAAAGTTACTGGAACAATGCCAAATACTATTGTGGTTAGCAAAAATAGACAAGATAGTTTGCAttcaaatgaaatgaaacaatACTGACTTGATGGCTAATGGCACTGACATCTCTGATAGTGGCACCTCTAAAACTTAAAAGCATCCTGGAATTAATAAAGAGTTCTAGAAAACACCTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100025 lncRNA downstream 145436 16316945 ~ 16321653 (-) True G74211
TU100015 lncRNA downstream 175070 16286228 ~ 16292019 (-) True G74205
TU100012 lncRNA downstream 214337 16252492 ~ 16252752 (-) True G74203
TU100011 lncRNA downstream 244816 16219096 ~ 16222273 (-) True G74202
TU100007 lncRNA downstream 251564 16202524 ~ 16215525 (-) True G74199
TU100092 lncRNA upstream 37699 16508004 ~ 16508462 (-) True G74265
TU100116 lncRNA upstream 170537 16640842 ~ 16641656 (-) True G74285
TU100117 lncRNA upstream 189198 16659503 ~ 16690357 (-) True G74286
TU100126 lncRNA upstream 272755 16743060 ~ 16747522 (-) True G74295
TU100143 lncRNA upstream 300137 16770442 ~ 16786039 (-) True G74306
XM_015605124.2 mRNA downstream 9335 16447496 ~ 16457754 (-) True acsbg1
XM_022672200.1 mRNA downstream 9335 16448827 ~ 16457754 (-) False acsbg1
XM_022672198.1 mRNA downstream 52744 16384549 ~ 16414345 (-) False cib2
XM_007228263.3 mRNA downstream 52744 16384549 ~ 16414345 (-) True cib2
XM_007228261.3 mRNA downstream 116925 16317884 ~ 16350164 (-) True tbc1d2b
XM_022672203.1 mRNA upstream 19342 16489647 ~ 16528087 (-) False LOC103042575
XM_015605134.2 mRNA upstream 19342 16489647 ~ 16522741 (-) True LOC103042575
XM_022672204.1 mRNA upstream 19342 16489647 ~ 16512606 (-) False LOC103042575
XM_007246487.3 mRNA upstream 147846 16618151 ~ 16738665 (-) True otud7a
XM_007246489.3 mRNA upstream 344611 16814916 ~ 16829981 (-) True bnip2
XR_002650248.1 other downstream 688666 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1921651 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3845733 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3902123 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1406721 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1512442 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2468869 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2600633 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3389389 19859694 ~ 19865982 (-) True G75100

Expression Profile