RNA id: TU100428


Basic Information

Item Value
RNA id TU100428
length 444
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G74535
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18371716 ~ 18375539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTGTACATGGCTGAAGAGCCAACTGTGTCCTGTCTTTTGGACGGGACATCTTCCTGGCTGTGGGGAGGCTGAGTCTGTCCCTGCTTCTTACTTCGTCCGCCTGAGCCATcttcaGAGTCCAGCAGGAAGCAGGTGAGCAGGTGAGGGCACACTTCCTCCAGCACAGAGCAGAAGGAGCAGAATGCACCCGGGCCCTTCTGTGCCAGCCGGTCCAGAAAAAGCTCTGCCCTCTTCTTGCTGCTCTCCTGACCCAGGATCTCCTTATATTCCCCCAGAGAGAAGACCTTGTCGTACACCAGGTACGGCAGCACCTTGTTCACGTCCAGCTCGTTCAGCATCATCTCTCTGTGCTGCTTCAGAACCGTGGCGACCCATTTCCCCTTCTTCCTGCTTACTCCCTTCCTGGCTCCGTTCTTCTGCTTCTTGTTCTTCCTGACAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100397 lncRNA upstream 158355 18211912 ~ 18213361 (+) True G74510
TU100354 lncRNA upstream 189611 18115583 ~ 18182105 (+) True G74477
TU100356 lncRNA upstream 191946 18177695 ~ 18179770 (+) True G74479
TU100353 lncRNA upstream 238857 18115583 ~ 18132859 (+) False G74477
TU100377 lncRNA upstream 247881 18120609 ~ 18123835 (+) True G74494
TU100578 lncRNA downstream 85905 18461444 ~ 18462636 (+) True G74654
TU100586 lncRNA downstream 102590 18478129 ~ 18479345 (+) False LOC103029914
TU100600 lncRNA downstream 158269 18533808 ~ 18534130 (+) True G74668
TU100608 lncRNA downstream 249532 18625071 ~ 18626410 (+) True G74672
TU100662 lncRNA downstream 252110 18627649 ~ 18628028 (+) True G74714
XM_007246531.3 mRNA upstream 143970 18214109 ~ 18227746 (+) True LOC103027907
XM_007246530.3 mRNA upstream 160030 18196150 ~ 18211686 (+) False cep152
XM_007246532.3 mRNA downstream 51325 18426864 ~ 18430628 (+) True LOC103028223
XM_007246534.2 mRNA downstream 72769 18448308 ~ 18452812 (+) True LOC103028854
XM_007246535.3 mRNA downstream 72769 18448308 ~ 18452812 (+) False LOC103028854
XM_022671891.1 mRNA downstream 81054 18456593 ~ 18459147 (+) True LOC103026409
XM_007246538.3 mRNA downstream 95165 18470704 ~ 18478934 (+) True LOC103029914
TU99974 other upstream 2083387 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3450713 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3722165 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5473785 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 5768292 12603352 ~ 12603424 (+) True trnar-ucg_4
TU100573 other downstream 79312 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 707277 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1152452 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1828080 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2647717 21023256 ~ 21025128 (+) True G75383

Expression Profile