RNA id: TU100463


Basic Information

Item Value
RNA id TU100463
length 2138
RNA type TUCP
GC content 0.35
exon number 6
gene id nrg4
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17877026 ~ 17885395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTTCATCATTTCAAGTCACTTCAACCAGACAGAGTAGCTCACCTGACTCGGCAAAGGGAACAAACTGGGAACGTCTTTGCTCTGGTGGAAGCAGATATTCTAGTGACAAGGGGTTCCTGAGCAGTTCTCATGATGGCAGATCACGGTGACCCTTGCACTGGGTCAGAGGAGTTCTACTGCATGAATGGAGGAAAGTGCTTTAAAATTCCTTCGGTGTCCACACCtacctgtgtGTGTGGAGACAACTTTAAAGGTAGCCGATGtgagcagttccagctgctgtCCATTTCACCCAACAGTGAGGAGAAAGGCATGATTGCTGCTGTGATCATCATACTTATTCTCATCATGATAATGCTGGCTGTTGTTATCTACTACATCTGCAAGATTAAAAAGAGGTCAgctgaaaacaaaagaaagcagCAAAAGAACAATAAAGGATATTGGAATGTGCAATCAAAGGCTACACTGACAGAACCATGAACAGCATTaggaaaataaactgaaatagtATGATTGAGCTTCATACTTAAAGAATGTGAGTTTCCAAAAAGCACCCTCTGGTGGAGGCATTGTATAATGCACAATGACTCTGACTCCAATCTTTCTGATTTATCTTTCTTAAGATTTCAAAGAAAAGTTGTAAATAGTTATTTTtcagtttacagtttttaaacaaatcTAAAATGTTTAAGTTAGATATAAAATAGAATAAGTGATGAGACGTAGGGACAGAGTTATTATATTCTATGAAAAAAGGATAGCTTACATTTCAAAGTTACGTCTTGTTCTTTTTGATCTACTGCcagcaaatatttaaaaaaagtatcagTGACTGTTGTGTCTTTGAGACGTTTTCTTCTAAGGACTCTTTCATGCAGGACATATTTGTGCAGGTGTGgctgcacagtagaacaatGCACCTATTCTTTAGAGTCTGCATAATCTCCCCTAATCTTTCACAATCAAACAAGGTTTTGATTAATCTTTCTATCAACCTTActaacattacttttaaaagtttttttggtctcCAAAACCTCAGCTTGGACTTCCACCATTTCTATTAACCGACATTACAATGGCCTCTTGAAATATTTACtcttatttttaccttttagtGATTTGTGGTCATTATTTATAGTAATAGTTAATAGTTTTAGACAACAGTTTAAAGGAGACCATGGCTGCTGATCGCTAGGATGAGGTTTGCGGAGTCAAGGCATCATCTGGCCTTTTCTAATGATGACTGCAAACAAGCCATTGCCCacacaaactaaaaaatatcTCAGACCCTGGAAAAGTGAGAGTTCAAATCTAGCTTGGTGCACAAACATTtgcaaagtgctcctatatttatttttctatcctATTCTCACCAGaagcacaagaaaaaaaaaaagaatctagATTTTCCTTGAGCCTAAATTATCACGCACATACTTAACCCTAGAACCCAAGTCTACACGTGTTTAATCCTACATACCggtatacaatacaatatttgtCTCACAATTTGTGCATGATGTTGTTTAGACGGTTGTATTACGGATGTATTATTAACAGCTTTGTTTAAGACAACAAATGGTATGTGACTAATATAGGTATCGTCAGATACTCAATGTTGCAAAAATGGTAAAGTGCCAACATTCCACTAATCCTAATTCAATTTGTCGCTCAACAATATAATGGAAACATATCTGTACATTTTGAACTCACCAAAACACATAAACATGACGCTATTGTACCACTAAGAAAACACCCTGCGAATACAACACTCtgtaattaactatatattgtatatttgttttaatctttaatgaagaaaaaaaagttaaacagtgttcatttacatTGCATGTGTGTTCATTGTTAAAGTAGTGTCAATGTgatcaaatgtattttatctGTTGGACAATGTGTATGTGGggatgtgtatatgttcagttccagcagcagctcacctgatttacaaaatttaccaaaccaggtgttgatatgataaaaactatgaataactctattaaactattaataatattattaatattaaagctctgctttttgtaaaattgctgtttgtatttattctaatcCTAGTgctttactgagctaataaacacttacttcacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100453 lncRNA downstream 10888 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 14285 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 63061 17805335 ~ 17813965 (-) True G74447
TU100263 lncRNA downstream 621737 17254917 ~ 17255289 (-) True G74407
TU100220 lncRNA downstream 1075975 16797045 ~ 16801051 (-) True G74368
TU100508 lncRNA upstream 334503 18218289 ~ 18227676 (-) True G74599
TU100560 lncRNA upstream 466845 18350631 ~ 18350936 (-) True G74640
TU100649 lncRNA upstream 718191 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 729590 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 745275 18629061 ~ 18629405 (-) True G74716
XM_022672211.1 mRNA downstream 276553 17588028 ~ 17600473 (-) True LOC103045440
XM_007246494.3 mRNA downstream 286882 17588028 ~ 17590144 (-) False LOC103045440
XM_007246493.3 mRNA downstream 451565 16992911 ~ 17425461 (-) True LOC103045127
XM_022672210.1 mRNA downstream 790019 16992911 ~ 17087007 (-) False LOC103045127
XM_022672209.1 mRNA downstream 888536 16966782 ~ 16988490 (-) True ice2
XM_007246514.3 mRNA upstream 77909 17961695 ~ 17975485 (-) True etfa
XM_007246515.3 mRNA upstream 106701 17990487 ~ 18110831 (-) True scaper
XM_007246519.3 mRNA upstream 232659 18116445 ~ 18123698 (-) True LOC103024839
XM_022672219.1 mRNA upstream 242001 18125787 ~ 18141692 (-) True sqor
XM_022672218.1 mRNA upstream 242001 18125787 ~ 18141326 (-) False sqor
XR_002650248.1 other downstream 2098603 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3331588 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5255670 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 5312060 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 5312152 12564348 ~ 12564874 (-) False fbxo31
TU100498 other upstream 98961 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 1055388 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 1187152 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1975908 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 2143376 20027162 ~ 20032027 (-) True G75207

Expression Profile