RNA id: XM_007246510.3


Basic Information

Item Value
RNA id XM_007246510.3
length 3464
RNA type mRNA
GC content 0.38
exon number 5
gene id nrg4
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17877026 ~ 17885395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaatgcatttttgTCAGAATTGCACACAAACCTCCTTAAAATGCAACCAGCTCAACTGCATTGTATTCCACTGTGTTGCGCTGCGAATgttcaaaagcaaatcacaatgcacaggatAGCATTTCTTTCAAGGGGCTCGAATAGCTTCCACACCGAGCATGGCAGCAGCAAACCCCAGACAACTGACTGGAGATTGTTCTCTGGACTTATCGCTCCTGGGCTCAAAAGTAGTGTTTACACTGAACCAGAAAAATGAAgtgattacatttaattttggcATGAATTGCGCGCTGCTCTTAGACAAAATGAAATCTTGTGCATTGTGATTTTTGGTTTTGAACATTTGCAGCGCCACACAGTTGAATAAAATACCATTGAGCTGATTGCATTTTTAGGGAGGTTTGTGTGCAATTCTGACACAAATTCATGGattgtttttgaaaatgtaaatccttgtgtattgttttttaataaagagattAGAGATGTaatagtggttttgcattttattttggcACTTTTTCTGCATGTTAGTGTGGAAAAGCAAAGCATCTTGTGGATTGCATTTGCATTTTTCCATGGTAGTGattgcttttcaatttggccCTAATTCCTCTCCATATTACAGCATTAGGAGAAATGGAAAAGGTAATACACTGAATTTACTTATTCCATTATATTTCACAAATACTCTCTCTTTTAGTGGAGTTTTATAACTTAAATTTGGGAGTTTGATCCACGCCtttactcctcccactctccaaccaatataaaccgtcacttcctctctacctgcgtgtccaacaaacttgcacccacctcctccccatcttcctcctcaaTTTATTTTCTCCCCTTCTCTTCCCGTATCTCTTTGTGTgggggggcttcagcttcacgctTTTCCAGCAAAGCTGCTCCGAACTCCTGCCCAATCATCTGAGTTCGCCCCccttctcttttccttctctttcagtcaagggcgtggggaAATACTAGCAAATTATGTGCTAACATTTCTACATAAAACTGTGAAAAGTATCATcatcttcacaaaaaaacaaaggattGCCATATCCTCAGTATATTGTACtacactaatgctaatacacatttacacacctcaAACCTCAGGATTTTTTGGCTCTTCCTAACGGTTTCATGTAAAAAACACCCTTGTCCCTGGTGTGCCCTGTAAGCAGGAATGTAAACACGACGCTGAGAGTTCACAAAGTTCCCACAATTCCACACATACCTGTGTGTAGTTCAGTGGATTTCCTCTTAAACATAGCAGACATAGTTGAGTTTGTGTCGTCAGCCCATACAGAGCCTGAGAGCAACCTCGGTAAGAGCAGGCCATTACTCACATTACTCATCCACACCACAATTCACACtgtaaaatcagtttaaaacacAACATTCAGAAAAGAAGAATGTAATGAAGAATGTTAAGGGAATATAATGAGACGGCGTGATCCCTCtcatttacattttcacaatGTTTTACCTGTGGTAGTCAGCAGGCCAATTGTACCATTTGCAATGTGGACAAACAGCAACCACCGCATTTCTGGCATGCCTGTGTCACTATTTGTGGCACAAGAACTTTCTTTTCATCATTTCAAGTCACTTCAACCAGACAGAGTAGCTCACCTGACTCGGCAAAGGGAACAAACTGGGAACGTCTTTGCTCTGGTGGAAGCAGATATTCTAGTGACAAGGGGTTCCTGAGCAGTTCTCATGATGGCAGATCACGGTGACCCTTGCACTGGGTCAGAGGAGTTCTACTGCATGAATGGAGGAAAGTGCTTTAAAATTCCTTCGGTGTCCACACCtacctgtgtGTGTGGAGACAACTTTAAAGGTAGCCGATGtgagcagttccagctgctgtCCATTTCACCCAACAGTGAGGAGAAAGGCATGATTGCTGCTGTGATCATCATACTTATTCTCATCATGATAATGCTGGCTGTTGTTATCTACTACATCTGCAAGATTAAAAAGAGGTCAgctgaaaacaaaagaaagcagCAAAAGAACAATAAAGGATATTGGAATGTGCAATCAAAGGCTACACTGACAGAACCATGAACAGCATTaggaaaataaactgaaatagtATGATTGAGCTTCATACTTAAAGAATGTGAGTTTCCAAAAAGCACCCTCTGGTGGAGGCATTGTATAATGCACAATGACTCTGACTCCAATCTTTCTGATTTATCTTTCTTAAGATTTCAAAGAAAAGTTGTAAATAGTTATTTTtcagtttacagtttttaaacaaatcTAAAATGTTTAAGTTAGATATAAAATAGAATAAGTGATGAGACGTAGGGACAGAGTTATTATATTCTATGAAAAAAGGATAGCTTACATTTCAAAGTTACGTCTTGTTCTTTTTGATCTACTGCcagcaaatatttaaaaaaagtatcagTGACTGTTGTGTCTTTGAGACGTTTTCTTCTAAGGACTCTTTCATGCAGGACATATTTGTGCAGGTGTGgctgcacagtagaacaatGCACCTATTCTTTAGAGTCTGCATAATCTCCCCTAATCTTTCACAATCAAACAAGGTTTTGATTAATCTTTCTATCAACCTTActaacattacttttaaaagtttttttggtctcCAAAACCTCAGCTTGGACTTCCACCATTTCTATTAACCGACATTACAATGGCCTCTTGAAATATTTACtcttatttttaccttttagtGATTTGTGGTCATTATTTATAGTAATAGTTAATAGTTTTAGACAACAGTTTAAAGGAGACCATGGCTGCTGATCGCTAGGATGAGGTTTGCGGAGTCAAGGCATCATCTGGCCTTTTCTAATGATGACTGCAAACAAGCCATTGCCCacacaaactaaaaaatatcTCAGACCCTGGAAAAGTGAGAGTTCAAATCTAGCTTGGTGCACAAACATTtgcaaagtgctcctatatttatttttctatcctATTCTCACCAGaagcacaagaaaaaaaaaaagaatctagATTTTCCTTGAGCCTAAATTATCACGCACATACTTAACCCTAGAACCCAAGTCTACACGTGTTTAATCCTACATACCggtatacaatacaatatttgtCTCACAATTTGTGCATGATGTTGTTTAGACGGTTGTATTACGGATGTATTATTAACAGCTTTGTTTAAGACAACAAATGGTATGTGACTAATATAGGTATCGTCAGATACTCAATGTTGCAAAAATGGTAAAGTGCCAACATTCCACTAATCCTAATTCAATTTGTCGCTCAACAATATAATGGAAACATATCTGTACATTTTGAACTCACCAAAACACATAAACATGACGCTATTGTACCACTAAGAAAACACCCTGCGAATACAACACTCtgtaattaactatatattgtatatttgttttaatctttaatgaagaaaaaaaagttaaacagtgttcattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100453 lncRNA downstream 12592 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 15989 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 64765 17805335 ~ 17813965 (-) True G74447
TU100263 lncRNA downstream 623441 17254917 ~ 17255289 (-) True G74407
TU100220 lncRNA downstream 1077679 16797045 ~ 16801051 (-) True G74368
TU100508 lncRNA upstream 332894 18218289 ~ 18227676 (-) True G74599
TU100560 lncRNA upstream 465236 18350631 ~ 18350936 (-) True G74640
TU100649 lncRNA upstream 716582 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 727981 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 743666 18629061 ~ 18629405 (-) True G74716
XM_022672211.1 mRNA downstream 278257 17588028 ~ 17600473 (-) True LOC103045440
XM_007246494.3 mRNA downstream 288586 17588028 ~ 17590144 (-) False LOC103045440
XM_007246493.3 mRNA downstream 453269 16992911 ~ 17425461 (-) True LOC103045127
XM_022672210.1 mRNA downstream 791723 16992911 ~ 17087007 (-) False LOC103045127
XM_022672209.1 mRNA downstream 890240 16966782 ~ 16988490 (-) True ice2
XM_007246514.3 mRNA upstream 76300 17961695 ~ 17975485 (-) True etfa
XM_007246515.3 mRNA upstream 105092 17990487 ~ 18110831 (-) True scaper
XM_007246519.3 mRNA upstream 231050 18116445 ~ 18123698 (-) True LOC103024839
XM_022672219.1 mRNA upstream 240392 18125787 ~ 18141692 (-) True sqor
XM_022672218.1 mRNA upstream 240392 18125787 ~ 18141326 (-) False sqor
XR_002650248.1 other downstream 2100307 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3333292 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5257374 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 5313764 12564348 ~ 12564966 (-) False fbxo31
TU100498 other upstream 97352 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 1053779 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 1185543 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1974299 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 2141767 20027162 ~ 20032027 (-) True G75207

Expression Profile