RNA id: XM_007246538.3


Basic Information

Item Value
RNA id XM_007246538.3
length 4050
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC103029914
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18470704 ~ 18479345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgGGATTTGATCAGCATCATCACTACCGCTTGTCCCGGGCGGATGGTCGTGTAGGAGGATCGAGGCGTGATCATCGGTTTACTGTCTGATCCACTGTTAGATGTAACAGAACCGCGCGGTTTAGAGGAGTAACTCGTCCGAGTGAATGCAGTCATCCACCTTGCATGGAAAGCTGTTATTGTGGATATAACAATAGCTGAGGGTTTTAACGAGAGCCACGTTCTCGGGTAGCCAAGAGGCGAGgttgctGAATATTACTGAGATCAGGCATCTAAGAAAAAAGGATCTTAATGGCAGaAAACAATTTCCCTCCTCTCCCCCGTTTCATCCCACTGAAGCCATGCTTTTACCAAGACTTCAACGAGATCCCGGACCAAAGGCGCACCATGTGCAAGCGGTTGTACTATCTCTGGATCTTGAACAGCGCTACTCTGGCAGTGAACCTGATTGGTTGTCTAGCTTGGATGTGTGGTGGAGGCGGGGCAACTAACTTTGGAATGTCCATTCTCTGGCTGATTTTGTTCACTCCCTGCTCCTACGTCTGCTGGTTCAGGCCCATCTACAAAGCCTTGAAgaCTGATAGCTCTTTCAACTTCATGGCGTTTTTCTTCGTATTCATGGCCCAGGTTGTGATCAGTATTATTCAGACAGTGGGAATTCCAGGCTGGGGAGTGTGTGGCTGGCTGGCTACCATCACATTCTTCAGCACTAATATTGGCTCTGCTGTGGTCATGCTGATTCCCACTATTATGTTCACAGCTGTGGCTGTGCTCTCCTTCATTGCTCTCACCAAGGTCCATAACTTCTACCGTGGCAGTGGAGGAAGCATGAGCAAGGCTCAGCAGGAGTGGACAACAGGTGCTTGGAAAAACCCGCATGTCCAAGAGGCGGCACAGCAAGCTGCTATGGGGGCAGCACAGGGAGCCATGCAGGGCCAGCAGTACTCCGCCGCCCCCACCTACAACTATGATGACCCCATGTAATGGGGTTATTGGAAGAAATAAGCAGAGGAGATCATAACAGGGTATTAGAGAGGGTGGAGGGGTGGGATACTGAAAATATGGTGACCAAAACTTAAAGGGACGAAAGCAAATAACTGACCACTTCCATTTCAAACAGGTTTCCCTAGAACTATAATGCACAGGCACTCACTTCAgctgttttaaaagtttatggTAGGTTTAAGTATTGTTTTTCCTCTCTTGGCCCTATCAGTACTACAGtacttctcttttcttcctccACCAAGGCAGTTTTAATGACTATAAGCTATTCTGTCAATGATCATAGGTTAAATATGTCTGGACTAGAGCTCTAACAACAAAGCAATCTATTACACTGTGTTTCTATAGTAACTAGATTACTGCTCCAACCTGTCCTTGAGCGGTCTGCAGAAAATGGTATTTCTGTAGGCGATTAAATGTGTAAGCAGACAGTTTCTGGCTGCTTGGTGAATTCATCTTACTGATTTACAGGTCAGTGTATTGTAAGTCTTCTGCAAAAGGCCAGCTAACACtagatttaatttttaagtCTGGGACATCTGGGGTGaaatagctatagctatagtaatatagtaaatTAATCTGCTACTTTGCATTTCAGTTAGATTGAGCCATTCATTGGTCTTCGACCAGTATCAAAATGTGGCCTTACAATAGGTCTTAATGTtctggcttgtttttttttattcatgtttcatTCCAGTTTGTTTTGCTATAAGATAAATAGCCATACACTTGTACATTTACTctttttgtactttatttgttttgtttttgtgtattatGTCAATGGTGCAGGATTGTAGTTAATTAGATGTATACACTTTGTTGTTGTCAATATTGTTTTGTTACCTCAGGATTTACAGGTCTTATTTTGCTGTTGCACTGTAGCATTGGTAAAAGGTCAGTCTGAAGAGAATGTGCACTTTGCTTAAATATCAGTTCAGGActgagtttttaaaatgttgcttaCTCTAAAAAGTTCATAAGGTTACTGAGATTACAAAAAATCTGAGTGTTTGCAGACACTGACATTTATTTCAGACGCCACTAGAAACTAGGAAGCTCTCAGCAAATAATACTAAAAGAAGCTCCGTCCCCTTTAAATTTCCTAGTGTTCAGAGAATCACCTGTATTGCGAATCCCCCACTTGAGTCATGAGCTACTGCTTTATTTACCATTTTAATCATGATTTGATGTGAGGTTGTTTTACTTTACTTGAAATGATATCCGATGTTATTTGTACTGTTGGGCATAGTGTGTAGTTGTGCAGTTATCTTAACTGCAGATTAACTCTTCCACCTGTTTTAGTGAAGCGAAacctatttattgagaaacagcAGGAGACGAAAAACGCCTGCAACTAAAGCACACTTGTTATTCAGTCTGAATTACATAGGAATCATAAACAGTATCAGGCGCCTTTCGCTGATAAATAATGAATTCTGTAATTTCGTAATAGGATTATGGATTTTGCTGTAATATCTCCTctgattttgtgtaaatatttgcTGTGATAcagtcagtaatcagtaattgtTGTGTAAAATTCCTGAAATGATATGGATCTGAAGGTGGTGTAAACCCTTAGTCAGCTGATAAGGTTGTGGTATTTTAAATACGTGTAATTCGTGTAATTAAGACATGACAGATTGATATTGATATAGAGTTATGTTTATAGAAGAGGCTTGAATTTATCTCTGAAAGGGTCTGTGGGTTGTGCTTAGACTTGAAGTGACTGCATTGAACGGTCTTTATATATTCTCAAGTATACTTTCAATTCATGCAAGTAAATAGGTCAAAATCACACtatacatgtacagtatatgtgataTGTAATCAAACTGTCTGAATCAAGGCTTGTAAAATAGCACCTCATCTCAAGAACTGTGAAATGTTTTCATGTGCTCATGTATGGAGTGTATATTGATGTGTATGTTTGACTTTTTGtattcttcttattcttttttttgtttttagatttctGTAATGACCTTTATTGTTTGGATTATTGATaagtgtaagtgagtgtgagcAGCTTTAGCGTTCACTGTGTTGTACCTGTTACACTGGAATGGTCATGGGGCTTGGTAAAAGAGGACCATCAGGTTTACTGCTTTGACGTGGTGTTTTAGTAGAAGTTGCCcttagaagtgtttttttttttttttgccagaagATAATTAAGCTAGAAATTTGTAAACCAGAGGATGTGTCTGAGTTTTAACTGCACTTAACACGCCTCAACTCAGTTCCTGAGGTTAGTTAACTGGGCGTGTTACAACATATAGGCCAGTGCTACTCTTCTGAGAACAAAAAAAGAGCGCCCCTCTAGCTGATGGGAGGTTTTACAGTTCCTCTCTTGTATTCTTtcagattaaatataaaataagacaataataaataatgttgttAAACTTTGAACTAAACTAAGAAGCACCAGCAGAAGCTAAGCCCACTGTCCATTGCCAAGACCCACTGCCCATCTCTGTACCACAAGCTGAATGCATAATCAACACTGTCAACAGTAGATGAAGCCTTGTTTATAGTGTAAAATGACCAGAAAGATGACAATAGAACAAAAAACGATAGTCGTCTGTGTAAGGTGTGTCCTGTGTGGTGCTTGGTAAACTTGTGCCATGTGTACATAggtgatgtgtgtgtgcgtgcgtgcgtgtgtgtatgtgtagatgTGTTATTATGTGTGTCCAACCCAAAATGGAATGTATTTGTTGACTCGGAGAAAAGAGCTGCAGTCCATTTTAcgggttttcttttctttcatgttttatttcttatttaatctTTTTGTCGTTTATGTTGCTGTGACGGGTcagaatgttcatttttttttttttttattagttagttagagATGAATACTGAGTTATCTTTAACATATTGAAGGGTAAATAACTCTGGAAATCAAGCAATCCATTGAGCGTGCTCTTTAAAAGCATTTAGAGGATTCTTTTCTAGTCCATTTTGTATtacttttgtattattttgtgtcTCCCTGATGGCTAGTAAACAGATATTGTTGCA

Function

GO:

id name namespace
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100578 lncRNA upstream 8068 18461444 ~ 18462636 (+) True G74654
TU100428 lncRNA upstream 95165 18371716 ~ 18375539 (+) True G74535
TU100397 lncRNA upstream 257343 18211912 ~ 18213361 (+) True G74510
TU100354 lncRNA upstream 288599 18115583 ~ 18182105 (+) True G74477
TU100600 lncRNA downstream 54874 18533808 ~ 18534130 (+) True G74668
TU100608 lncRNA downstream 146137 18625071 ~ 18626410 (+) True G74672
TU100662 lncRNA downstream 148715 18627649 ~ 18628028 (+) True G74714
XR_002650255.1 lncRNA downstream 223787 18702721 ~ 18703887 (+) True LOC111193102
TU100720 lncRNA downstream 478704 18957638 ~ 18970866 (+) True G74770
XM_022671891.1 mRNA upstream 11557 18456593 ~ 18459147 (+) True LOC103026409
XM_007246534.2 mRNA upstream 17892 18448308 ~ 18452812 (+) True LOC103028854
XM_007246535.3 mRNA upstream 17892 18448308 ~ 18452812 (+) False LOC103028854
XM_007246532.3 mRNA upstream 40076 18426864 ~ 18430628 (+) True LOC103028223
XM_007246531.3 mRNA upstream 242958 18214109 ~ 18227746 (+) True LOC103027907
XM_007246539.3 mRNA downstream 5520 18484454 ~ 18496455 (+) True LOC103030240
XM_007246540.3 mRNA downstream 27672 18506606 ~ 18513315 (+) True ubl7
XM_007246542.3 mRNA downstream 35813 18514747 ~ 18524175 (+) False LOC103030871
XM_007246541.3 mRNA downstream 35814 18514748 ~ 18524175 (+) True LOC103030871
XM_022672239.1 mRNA downstream 56940 18535874 ~ 18575367 (+) True LOC103026700
TU100573 other upstream 15507 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2182375 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3549701 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3821153 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5572773 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 603882 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1049057 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1724685 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2544322 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2609688 21088622 ~ 21096906 (+) True G75391

Expression Profile