RNA id: TU100659


Basic Information

Item Value
RNA id TU100659
length 993
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G74711
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18613376 ~ 18614926 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAAATACAGGTCCTGCACTGATGCAGTCCACTAAAAACCCAATGACGGAATTCTGTTTTAAAGCAGAAGAAAATGTCCTGGACTGCAGCTGCTTGCTGGAAcgctttatttgctttattgtcATACACAATTAGGTCCAGATATCTGTAGAAAAAATACAATAgcatttgaattaaaaatatagacTGGAAACCAATCAAATGAACTGGCAGAGGCCTTTGCAGTCACATGGCCATATTGGGCATTTGAGTTTACATTCATTTAGTATCTTTGTTTGTGCTCAGGGAGTTTTAAAATCCATCTTACATTCTATTTTGGcatataaaattgtattatttgtatttactgtagtaCTAATATATCAATGATTGTCTTATGCCTAATGAGCCGGTTGTtaaaacagacaggtgctgtatACAGAGACTTTCTGGCTGATTTCCTGAAGCAGCTCTTTCACAGCCTTTTCCAGATCCACCAGTTGGTTGGCCTTGTCCTCAAGTTTCTTCTGGTTTTCATCATAGGATTTTTCCAAACTTTAAGTAGCCGTAGTTTGTCACTTGCTTGCAGCAGTAGGTCTTTGGCTTCCTGTTGAAGCACCTCAGCTTTTTTCTTAGCATCTACCACTCCCTGTGCTTTCTCAGTGATCAGCTCCTccacactactgtacttatCCTTTAGCTCTGTATCCAGATCCTTTTTGAGCTGCTCTGCCATCTCGTTAATACTATCTGCATCTTCTTCTGTCTTCTCAGCACTGATGGAGGTATTAAGAGCTTTCTCTTTCAGCAGAGCTACATCCCTCTCCAGCTGTAGTAGCCTGACGGTAGCATTACTCAGCTTGAACTCGGAATCAGCCGTTTCTGACTCCACCTGTTGGAATGGAAAAATAGGTCAAATTAGACCTTATTGATGTCACAATACAGTTTACCATCTACCAAGAATAGAATTCTCAATTACaccaacatgccaaaagtcataaaCTGATTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100649 lncRNA downstream 5631 18601977 ~ 18607745 (-) True G74704
TU100560 lncRNA downstream 262440 18350631 ~ 18350936 (-) True G74640
TU100508 lncRNA downstream 385700 18218289 ~ 18227676 (-) True G74599
TU100453 lncRNA downstream 747238 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 750635 17845126 ~ 17862741 (-) True G74556
TU100664 lncRNA upstream 14135 18629061 ~ 18629405 (-) True G74716
TU100683 lncRNA upstream 22337 18637263 ~ 18640185 (-) True G74735
TU100688 lncRNA upstream 34513 18649439 ~ 18649771 (-) True G74740
TU100748 lncRNA upstream 333703 18948629 ~ 18950116 (-) True G74792
TU100756 lncRNA upstream 345878 18960804 ~ 18967910 (-) True G74796
XM_007246536.3 mRNA downstream 145263 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 164821 18430338 ~ 18448555 (-) False LOC103028541
XM_007246533.3 mRNA downstream 166413 18430338 ~ 18446963 (-) True LOC103028541
XM_022672235.1 mRNA downstream 166760 18430338 ~ 18446616 (-) False LOC103028541
XM_015605114.2 mRNA downstream 187282 18406321 ~ 18426094 (-) True duox1
XM_007246544.3 mRNA upstream 4210 18619136 ~ 18625195 (-) True dld
XM_022671893.1 mRNA upstream 355486 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA upstream 355486 18970412 ~ 18973144 (-) True LOC103034129
XM_007246627.2 mRNA upstream 360382 18975308 ~ 18977165 (-) True LOC103027908
XM_022672242.1 mRNA upstream 363922 18978848 ~ 18987058 (-) False LOC103028224
TU100498 other downstream 583629 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 729590 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2834953 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4067938 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5992020 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 324248 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 456012 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1244768 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1412236 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1472492 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile