RNA id: TU100683



Basic Information


Item Value
RNA id TU100683
length 382
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G74735
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18637263 ~ 18640185 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTTGCGTTTGGAGTCTGTGGACATTGCAGAGTTGGCTGGTCACAGTATGGTCCAGTGCCATTTTGGCTATGGTTGCTTATGGTCAGGCCTTCAGCAGGAATGTCCTCTGTTTTAATCTGCATAGTCACAGTCTGGCAGTATGTTTCAGCCACAGACTTCTTATTCACAGAGTTAGATTTCTTCTTCTTAAAAGTCTGTTTAACGCcCTGATTCTGAACAGAATTACGCATCCTCATCGGTAAAGAACGGGACTGCACCATACCTTCCATATCTCCTGGCGTGGCGCTTCGCAGTGCTTTTACCTGCAGTGAGGCAGATTTACCGCGTGAACTCAGACCCTTTTCCTTCCACCAAAATCAAACTGAAATTCTCGCACTGTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100664 lncRNA downstream 7858 18629061 ~ 18629405 (-) True G74716
TU100659 lncRNA downstream 22337 18613376 ~ 18614926 (-) True G74711
TU100649 lncRNA downstream 29518 18601977 ~ 18607745 (-) True G74704
TU100560 lncRNA downstream 286327 18350631 ~ 18350936 (-) True G74640
TU100508 lncRNA downstream 409587 18218289 ~ 18227676 (-) True G74599
TU100688 lncRNA upstream 9254 18649439 ~ 18649771 (-) True G74740
TU100748 lncRNA upstream 308444 18948629 ~ 18950116 (-) True G74792
TU100756 lncRNA upstream 320619 18960804 ~ 18967910 (-) True G74796
TU100767 lncRNA upstream 344010 18984195 ~ 18986193 (-) True G74804
TU100779 lncRNA upstream 352638 18992823 ~ 18994884 (-) False LOC103034453
XM_007246544.3 mRNA downstream 12068 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 169150 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 188708 18430338 ~ 18448555 (-) False LOC103028541
XM_022671893.1 mRNA upstream 330227 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA upstream 330227 18970412 ~ 18973144 (-) True LOC103034129
XM_007246627.2 mRNA upstream 335123 18975308 ~ 18977165 (-) True LOC103027908
XM_022672242.1 mRNA upstream 338663 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA upstream 338663 18978848 ~ 18986645 (-) True LOC103028224
TU100498 other downstream 607516 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 753477 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2858840 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4091825 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 6015907 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 298989 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 430753 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1219509 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1386977 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1447233 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile