RNA id: TU100720


Basic Information

Item Value
RNA id TU100720
length 344
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G74770
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18957638 ~ 18970866 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgaagtgtgacaAATTATAGGTAAACCTGGAAACAATATTCAGAGCGAGAGGTGCATAACACGGCTCCCCTGTGTAGCACGCACAGTCAAACCTCTCCTGAAACCAATCGACGTCCTCCTGTGAGATCTGACCCTTCACAAACAGCCCACTCGTGCTGTCCTTGTAGATTTGATACCTCTGTGGAGACAAGTGAAGATACTCTCCACTGTCCCAGATCCTCCTCACACACCTGCCCTTACCCTGACACAGGGCTTCACTGCACAGCTGTGTGGCAGTGGTCACATTTAAGATGTATGGGTTCATGACTTCTTTTAGGTGGTGTTTTGCAGCTGCACAGGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650255.1 lncRNA upstream 253751 18702721 ~ 18703887 (+) True LOC111193102
TU100662 lncRNA upstream 329610 18627649 ~ 18628028 (+) True G74714
TU100608 lncRNA upstream 331228 18625071 ~ 18626410 (+) True G74672
TU100600 lncRNA upstream 423508 18533808 ~ 18534130 (+) True G74668
TU100586 lncRNA upstream 478293 18478129 ~ 18479345 (+) False LOC103029914
TU100774 lncRNA downstream 21812 18992678 ~ 18994863 (+) True G74810
TU100776 lncRNA downstream 21922 18992788 ~ 18994863 (+) False G74810
TU100800 lncRNA downstream 111446 19082312 ~ 19082521 (+) True G74831
TU100802 lncRNA downstream 114937 19085803 ~ 19086231 (+) True G74833
TU100846 lncRNA downstream 223507 19194373 ~ 19196148 (+) False cadps2
XM_007246549.3 mRNA upstream 7290 18939095 ~ 18950348 (+) True gpr37
XM_015605137.2 mRNA upstream 20511 18893227 ~ 18937127 (+) True pot1
XM_015605138.2 mRNA upstream 20511 18893227 ~ 18937127 (+) False pot1
XM_022672241.1 mRNA upstream 118881 18672401 ~ 18838757 (+) True LOC103033497
XM_007246546.3 mRNA upstream 289178 18653276 ~ 18668460 (+) True LOC103032349
XM_007246552.3 mRNA downstream 85921 19056787 ~ 19081399 (+) True LOC103034777
XM_007246553.3 mRNA downstream 85923 19056789 ~ 19081399 (+) False LOC103034777
XM_007246554.3 mRNA downstream 96971 19067837 ~ 19081399 (+) False LOC103034777
XM_022672249.1 mRNA downstream 127650 19098516 ~ 19114949 (+) True iqub
XM_007246558.3 mRNA downstream 148681 19119547 ~ 19133880 (+) True slc13a1
TU100573 other upstream 502441 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2669309 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4036635 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4308087 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 6059707 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 111950 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 557125 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1232753 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2052390 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2117756 21088622 ~ 21096906 (+) True G75391

Expression Profile