RNA id: TU100745


Basic Information

Item Value
RNA id TU100745
length 1258
RNA type TUCP
GC content 0.52
exon number 2
gene id G74791
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18939174 ~ 18940464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaatataaggAACTATTTTACAGGAGAACTCTCCGAGCAGCCAGTCCTTGGTGAGCTCATGAAAGATCACCAGAGGTAAACAGAAGAAGACTATGAGGAAATCCCACAGGGCCAGGTTGGCGAGCAGCGAGTTGGAAATGCTCCGCATGTAGTAATTATGGCAGACTATGCACATGATTGCTATGTTTCCGATTATCCCCACTGTGAAGATGATTATGGAGATGAACATGATGGCGTACGCCCCGTACGAGTCTCCTGTGAGCGGGTAGAAGGGGTTTTTAACCCCGGGGGTCTTGGGCCGGGTGCTGAGGGGCACTAGCGGGGTGAAGTCTTGGTAGTCGCCCTCTGGTACAGTAAATAAACCGTTATCCAGAGTGAAGTCACCGGGGGAGAATGTGGACTGGTTCTGGGCGAGGGGCTTAGGGAGGGTTTCCACCAACTTCTGAGCATCACTGTGGTCTGCTGAGGCGGGCTCAGGGTCCGTGCTGGTTCCACGTTTGTGCCGAGGATGTGAACTTGGCTCTTTCTGCAGGAGTGGGCGGCTGGAGGACCGCTGGGCTTGAAGATAACTAGCATCTCTCTGAGGGAGGTCCTCTGGGCTAGTTGTGGAACTCAGCAGGTCCTTAGTGCTGGTTCTGTAAGCCAGTAGGTCCTCAGGTCTAGTTCTGGGAGTCAGCAGGTCTTCAGGTCTAGTTCTGGAACTCAGCAGGTCCTCTAGTCTAGTTCTAAAACTCAGCCGCTCCTCCGGTCTAGTTCTGGAACTCAGCAGGTTTTCAGGTCTAGTTCTGGAACTTAACAGGTTCTCAGAGCTGCTGCTCTGCTCACAATCTCTACAGCTCAAATTTGGACTCCCGTTTAGGAGTGAAGAAAGTTCACAACACACCAGCAGACAAAACAATCTCTTCATTTGTATCCCCATGTTCCCCTCAACTCTTCAGTCACACCATACTCACAACCCCATGTTCATAAATCCATCAATCTGTAGAAAGATCCTCAAGTTCAGGACATTATCCCCGCCTCTCCAGCGCACAGCTCCGTATACACAGTCCAAACCTCACTTCATGAGAGTTCATCACTGtgagaaaagaataaaaaacctCCACTCCACTTCATCCTTCACTCCAGCATCCAGAAACATCCCGTATTTCTCCTCTCCAGCTCCACATCCACATCTCCTGCTGTGCGGCAGCTCCGGGCAGGGTGATGGAGTAGAGGCTCCGGACACTGACTCCGGCTGCGGCTGCCCGGCTCCCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100688 lncRNA downstream 289403 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 298989 18637263 ~ 18640185 (-) True G74735
TU100664 lncRNA downstream 309769 18629061 ~ 18629405 (-) True G74716
TU100659 lncRNA downstream 324248 18613376 ~ 18614926 (-) True G74711
TU100649 lncRNA downstream 331429 18601977 ~ 18607745 (-) True G74704
TU100748 lncRNA upstream 8165 18948629 ~ 18950116 (-) True G74792
TU100756 lncRNA upstream 20340 18960804 ~ 18967910 (-) True G74796
TU100767 lncRNA upstream 43731 18984195 ~ 18986193 (-) True G74804
TU100779 lncRNA upstream 52359 18992823 ~ 18994884 (-) False LOC103034453
TU100915 lncRNA upstream 339188 19279652 ~ 19341936 (-) True G74910
XM_007246544.3 mRNA downstream 313979 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 471061 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 490619 18430338 ~ 18448555 (-) False LOC103028541
XM_007246533.3 mRNA downstream 492211 18430338 ~ 18446963 (-) True LOC103028541
XM_022672235.1 mRNA downstream 492558 18430338 ~ 18446616 (-) False LOC103028541
XM_022671893.1 mRNA upstream 29948 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA upstream 29948 18970412 ~ 18973144 (-) True LOC103034129
XM_007246627.2 mRNA upstream 34844 18975308 ~ 18977165 (-) True LOC103027908
XM_022672242.1 mRNA upstream 38384 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA upstream 38384 18978848 ~ 18986645 (-) True LOC103028224
TU100498 other downstream 909427 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1055388 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3160751 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4393736 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 6317818 12610834 ~ 12621356 (-) True G73172
TU100809 other upstream 130474 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 919230 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1086698 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1146954 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1955639 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile