RNA id: TU100748


Basic Information

Item Value
RNA id TU100748
length 1457
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G74792
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18948629 ~ 18950116 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgatATTTGAGCTAAAACAACAGCTTTATCAGTGCTTTATAATGCCAACTGAAGTGCATGATATCCTTTTTTTCTGCTATCAAACACAGAGTAAACATAATAATACTTACATAGCAAGGGAGCCAGGTTTCACTTTGAACTGATTCATAAGAATcaccattttcttttcttttttttacgaCACAACACATTTACTAACAGCCTTTTTCACTTTCTTATTTTCCATAAAACTCAAAGATACtaataatgtaatgtttcaTTGAACTAAAGATGTAAACATTCcatttaaatagaaataaaacactgtgtaagaCAAGTGTGCAAAAACAATAAAGGTGAGTTAATTCACAATTAACAATCACTATGAACTGAACTTAAACTAAAGGTAACGCTCGTGATTTCCTCCTGTAAACAGCAGTGGACGCTTACAGTTGTAACACCCTCTGGACCTCGAATAAATGCATGGCTTTTTGTCCCTATAGTAAAGAGATATGATAAAGTACTCTGTGTGTCATTTCTAACTTAGTGTGAAGCAGTATGAAACTGTGTATGTCTCACTTGGTTTGTTCAGAGGATCAGAGCCCTTTATACAGAGTCCTATGGGTGGGACACTCCATAGGGCATAGGTAGGATAAAAGAACCCTAGCAGTGTGTGCCTGCAGCAGTGTAGGTAGATGTTTCCCTGCGCATGGTGCTGAAGGGTGAAAGCTCCAGTTCTGTGGTGCACTCGTGTTCATTATCGTCACTGGTGGCCGTGGACGACTTTGGTGGGCCGCACTcctcccagcagcagcagcagcagtccaGGAAAGCTCTACCGAAGGGTTTGCATAAGGCCAGCAGCAGCACCGGTGTGACCGCTGACTTGCAGAACAGCAGCATCTGACTGACCAGGTGCATAATATCCAGGGTGCGGCGCGGCACCCCCGCCGCCATGTACACGGACATGATGTTGCAGATGTTTTCAGGAATGGCACAGAAGCCGTAGAGGATGGCCAAAGCCACCACCATACAGTTCATCTGGCTCTCCAGCTGGATCTGCTTACGGTTCCCCCGCACACTGACTCGCTCAGCCTTGCGGATCTTCTGCGCCGTCACCACCGAGCTGATAATAGTGAAGATGGTGGGCAGGCAGAAGTAGCAACCAAAATACCACCAGAGACGGGCGCCATTGTAGGTGAGGCCCAAAACATACAGAGTGTCCGGAAGTGCGGTGGAGATGCGGACCACGCAGCGCTCGCAGGGGGTCACCTCCGGGGGCTCGCGCTCCTCTCTCACCAGCTGGTGAATCAATAGCTCAGGCAGAGCCAGCAGCAGAGCTCCTATCCAGATGACTGCGAGTTTAGCCGCAGTGGAGGCACAGTTCTCAATCATCTCGTAATACATCTGCACGTTGGAGGCCGCACGGAACCGGTCGATACACAGGGCGCAGAGAGTGAAGGTAGTTACGCCCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100688 lncRNA downstream 298858 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 308444 18637263 ~ 18640185 (-) True G74735
TU100664 lncRNA downstream 319224 18629061 ~ 18629405 (-) True G74716
TU100659 lncRNA downstream 333703 18613376 ~ 18614926 (-) True G74711
TU100649 lncRNA downstream 340884 18601977 ~ 18607745 (-) True G74704
TU100756 lncRNA upstream 10688 18960804 ~ 18967910 (-) True G74796
TU100767 lncRNA upstream 34079 18984195 ~ 18986193 (-) True G74804
TU100779 lncRNA upstream 42707 18992823 ~ 18994884 (-) False LOC103034453
TU100915 lncRNA upstream 329536 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 337224 19287340 ~ 19290287 (-) True G74915
XM_007246544.3 mRNA downstream 323434 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 480516 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 500074 18430338 ~ 18448555 (-) False LOC103028541
XM_022671893.1 mRNA upstream 20296 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA upstream 20296 18970412 ~ 18973144 (-) True LOC103034129
XM_007246627.2 mRNA upstream 25192 18975308 ~ 18977165 (-) True LOC103027908
XM_022672242.1 mRNA upstream 28732 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA upstream 28732 18978848 ~ 18986645 (-) True LOC103028224
TU100745 other downstream 8165 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 918882 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1064843 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3170206 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4403191 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 120822 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 909578 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1077046 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1137302 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1945987 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile