RNA id: TU100776


Basic Information

Item Value
RNA id TU100776
length 2076
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G74810
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18992678 ~ 18994863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGAAATGGTGTCATCTGTTGGCTTTCTAATTGATGAGGAGATGAGGTACAGGTTAAAATGGTTACAGGGTAACAGAAACAATGtgcaaatgtaacaaaaatgaaGAATCACAATCTTTTTGTCAGTTTGTTcacttattaattcatttaattgttCAGCAACTTGGATATAAGTAAGATGTCTAGGAAACCTTCAGCATTTGTTTAAACTGTGTTGCATAGCAGAGTAGAAAACTTTggcaaattttaaaaaagtacctCTAATGTAGAAAAGCTACTAAAATATTGAGGTATAATCCTTTATTTTCTGCATCACTGGCTCACAAAGAAACCCTTTATCTTGTCAGTTTCAGTcagcattttacacaaaaaaaactgcactctaaactcttattttgaaatatCACTCATGCACATATGTGTAGAAAAGACGAACAATGAAAGCAATTAAAGTTTGAAAATATCTGCTTCTATATGTGTTCAGTTTATGTCTGTACATCTTTGGAAATTCATTGAAAAGTAAAATCCCTACAGGGATAAAGTTAAAAAGAATCAATTCACaaaactgaatattttattcgtttttttattttttgtactttttctgctgtaaatgataaaatagaaTACAGTCTAAATGTCCTGATTCTTTTCAAGTGTTCACGTGGGTTGTTCTGTGCCTAAAGTCCTGGAAATAAATTAGCATATTAACTAAAGTTAGGTATGTTACTGGCTTACTAGTAAGGTAGTAAGGTACTGTTTTTCTTGTATTGTTCATGAATCTGTATTTAGAGTAATGTTCAGAATTAGGACTGTTGACTGAGACTTTTCTTGAGATGACAGTAATTTTTAGATGATCAGCGTTCATCAAAGGGATACAATTAGGCTAAATATGTGATATATGGcttttacataaatatttttttaaatttgtaattaagtGGTATATTCATTACTCTCAGAACAGAGTGATTAGTGAGTTGGCAGATTACATTTTTGGTGGTATAGTTTCTCCACATCACATTAGCAAACACCAGTCAGCTTGATTAACAATTTACTAATTAACTTCACTAccttaaaaactgtaaaaattacaGGTTGTTCTTGCATGagtgaaaaaaacaatatactgtGAAAAAAATGCCCCAAAATATCAATGATATTTGTATTCTCAAGTCTGCTGGATCGATCACTTTGTGTGTTGGTATACAGAATGAAACAATTTTACACCAGCAACCTGCAAATATCTgctgtgaataaaaataaagcttttattttctgaatcTAGTGCTTATTAATAATTCATCTAAAAGTTGAGTAAATGCAAACCTTACAACTAACACGATACACTGCCTTTAGGGGGAATCTTGAGCAATATTCTGCCCAACTGCTGTGAAAATGTAGAGATCACGCTGCTCTGGGAATACAAGAAGACAATGAACAACGTGTTCTGCTTTGTGTCATAACATTAAAAGCCTCTGTTTTCACTCTGCATCAGTTTCTGCCCCGTTCTCCCTACTTCCCTGAAATCAAATGCAGTGTCTACAGGGAACGCAACCTTCAGTTCACTGGATTTTATCAGTGCCTTTGTAAAAGATgcagaagagcaagagtttccatTCAGcagctgctgaaaaaaaatataaattttagaCTTTATAACAGAAGTGATGAGCTTGAAAAGACTGACCTCAGCTAAACAGTACTGACATAGCTTACATAGTGTAGGGTTAAATTGTACATTGTGCAAACAAGGCTCTAGAGGGGCTTAATTCAGGTCCAGAAGGTAAACGAATTCAGCAACTGTACCAAAATGTACCAACTGCCTGGATGGCTCTGCTGGTTATGAAGCTTAAACACTAAGAAAGGTATTTGAATCTGCattttgtgtaaaacatgtatctccagaAAGCAACTTTAGAGAGGAGAGATAATACCtacttaactttcaatggaattcagtgtaaaaagagttaattttaggtcatttttgaaaaatgttctattggtcaatttgtgtgttcaaattatgtagtaaactaaaaatcaacaaaaatgtgaataaatgctTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100720 lncRNA upstream 21922 18957638 ~ 18970866 (+) True G74770
XR_002650255.1 lncRNA upstream 288901 18702721 ~ 18703887 (+) True LOC111193102
TU100662 lncRNA upstream 364760 18627649 ~ 18628028 (+) True G74714
TU100608 lncRNA upstream 366378 18625071 ~ 18626410 (+) True G74672
TU100600 lncRNA upstream 458658 18533808 ~ 18534130 (+) True G74668
TU100800 lncRNA downstream 87449 19082312 ~ 19082521 (+) True G74831
TU100802 lncRNA downstream 90940 19085803 ~ 19086231 (+) True G74833
TU100846 lncRNA downstream 199510 19194373 ~ 19196148 (+) False cadps2
TU100845 lncRNA downstream 199679 19194542 ~ 19196415 (+) False cadps2
TU100875 lncRNA downstream 465110 19459973 ~ 19462085 (+) False tmem17
XM_007246549.3 mRNA upstream 42440 18939095 ~ 18950348 (+) True gpr37
XM_015605137.2 mRNA upstream 55661 18893227 ~ 18937127 (+) True pot1
XM_015605138.2 mRNA upstream 55661 18893227 ~ 18937127 (+) False pot1
XM_022672241.1 mRNA upstream 154031 18672401 ~ 18838757 (+) True LOC103033497
XM_007246546.3 mRNA upstream 324328 18653276 ~ 18668460 (+) True LOC103032349
XM_007246552.3 mRNA downstream 61924 19056787 ~ 19081399 (+) True LOC103034777
XM_007246553.3 mRNA downstream 61926 19056789 ~ 19081399 (+) False LOC103034777
XM_007246554.3 mRNA downstream 72974 19067837 ~ 19081399 (+) False LOC103034777
XM_022672249.1 mRNA downstream 103653 19098516 ~ 19114949 (+) True iqub
XM_007246558.3 mRNA downstream 124684 19119547 ~ 19133880 (+) True slc13a1
TU100573 other upstream 537591 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2704459 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4071785 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4343237 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 6094857 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 87953 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 533128 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1208756 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2028393 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2093759 21088622 ~ 21096906 (+) True G75391

Expression Profile